Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A19
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0397 + 17571492-17571664,17571875-17572034,17572140-175722...    28   4.6  
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246...    27   6.0  

>10_08_0397 +
           17571492-17571664,17571875-17572034,17572140-17572222,
           17572333-17572468,17572515-17572610,17573105-17573218,
           17573322-17573405,17573493-17573648,17573744-17573818,
           17574318-17574424,17574508-17574688,17574832-17575020,
           17575397-17575477,17575621-17575755,17576007-17576329,
           17576503-17576608,17576734-17576883,17577034-17577180
          Length = 831

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 253 DAIACCSFSQLSVFNKLNAQFINII 327
           DAI CCSF +  VF   N   +N++
Sbjct: 725 DAILCCSFKEKPVFTFANEMGLNML 749


>05_01_0315 -
           2468267-2468293,2469021-2469070,2469159-2469234,
           2469498-2469575,2469967-2470048,2470146-2470238,
           2470564-2470673,2470831-2470893,2471293-2471344,
           2471421-2471545,2472681-2472794,2472917-2472961,
           2473278-2473337,2474725-2474778,2474944-2474992,
           2475071-2475252,2475349-2475404,2475491-2475584
          Length = 469

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 111 RYCFNLFILGRDLYWLFVSI--ICYI 40
           RYC++L   G  L WL +S+  +CY+
Sbjct: 82  RYCYSLKGRGASLVWLLLSVTYLCYL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,083,583
Number of Sequences: 37544
Number of extensions: 106100
Number of successful extensions: 203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)