Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_A19
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical ... 33 0.15
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 30 1.0
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 30 1.0
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 30 1.0
AL110478-12|CAM33509.1| 108|Caenorhabditis elegans Hypothetical... 29 1.8
AL110478-9|CAB54343.2| 113|Caenorhabditis elegans Hypothetical ... 29 1.8
AC006729-7|AAF60463.1| 157|Caenorhabditis elegans Hypothetical ... 28 4.1
Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z99286-2|CAH60793.1| 310|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81500-9|CAB04098.2| 141|Caenorhabditis elegans Hypothetical pr... 27 9.5
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 27 9.5
AF067613-11|AAN73862.2| 334|Caenorhabditis elegans Serpentine r... 27 9.5
>AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical
protein Y51A2D.12 protein.
Length = 334
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = -1
Query: 351 NAIGMLKYYNINKLCIKFIEDTQLTKTTTCYSVII*MTSVDISNVYNSNFEQGQQCYFI 175
N + ++ YN+ K +K E + + T + + + +TS+ +SN Y +N G F+
Sbjct: 200 NVLAGIRLYNMKKKGVKVPETSLFSMAFTVFVIDLFLTSLTVSNYYLTNLAIGSDSDFV 258
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 238 RHLNNDAIACCSFSQLSVFNKLNAQFINIIVFKHSYCIFLSFYSRDC 378
+H N A C++ ++ N L + FI + + Y I L F +RDC
Sbjct: 73 KHANQRAYVTCNYDMINPSNWLFSHFIEVKTARRIY-IELLFNTRDC 118
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 238 RHLNNDAIACCSFSQLSVFNKLNAQFINIIVFKHSYCIFLSFYSRDC 378
+H N A C++ ++ N L + FI + + Y I L F +RDC
Sbjct: 73 KHANQRAYVTCNYDMINPSNWLFSHFIEVKTARRIY-IELLFNTRDC 118
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 238 RHLNNDAIACCSFSQLSVFNKLNAQFINIIVFKHSYCIFLSFYSRDC 378
+H N A C++ ++ N L + FI + + Y I L F +RDC
Sbjct: 73 KHANQRAYVTCNYDMINPSNWLFSHFIEVKTARRIY-IELLFNTRDC 118
>AL110478-12|CAM33509.1| 108|Caenorhabditis elegans Hypothetical
protein Y26D4A.17 protein.
Length = 108
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 292 FNKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIFHRLLFFEYI 426
F K+ F I F Y FL F+ + F I+ + + FFEYI
Sbjct: 39 FEKVKKIFDKINQFYILYFSFLRFHELNHFPLIICIYLIFFFEYI 83
>AL110478-9|CAB54343.2| 113|Caenorhabditis elegans Hypothetical
protein Y26D4A.5 protein.
Length = 113
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 292 FNKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIFHRLLFFEYI 426
F K+ F I F Y FL F+ + F I+ + + FFEYI
Sbjct: 44 FEKVKKIFDKINQFYILYFSFLRFHELNHFPLIICIYLIFFFEYI 88
>AC006729-7|AAF60463.1| 157|Caenorhabditis elegans Hypothetical
protein Y24D9A.6 protein.
Length = 157
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 292 FNKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIF 399
+ K N QFI ++F S + FYS+ CF + F
Sbjct: 4 YRKKNGQFIFCLIFMCSSPLKKIFYSKTCFTHFLSF 39
>Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical
protein T19C4.4 protein.
Length = 304
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 273 TTTCYSVII*MTSVDISNVYNSNFEQGQQCYFI 175
TTTC SV + +TS+ I N N Q + FI
Sbjct: 186 TTTCVSVFVNVTSIAIVNQMNVQVRQEVEYNFI 218
>Z99286-2|CAH60793.1| 310|Caenorhabditis elegans Hypothetical
protein Y7A9C.8 protein.
Length = 310
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 364 YSRDCFYSIVIF-HRLLFFEYIFIVDV 441
Y C+Y ++F H LLFF F + +
Sbjct: 179 YKPPCYYGFILFFHALLFFSMPFYIPI 205
>Z81500-9|CAB04098.2| 141|Caenorhabditis elegans Hypothetical
protein F11D11.6 protein.
Length = 141
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 262 ACCSFSQLSVFNKLNAQFIN-IIVFKH-SYCIFLSFYSRDCFYSIVIFHRLLFFEY 423
A C + + ++ + +Q N + FK C F DCF ++ + + +FF Y
Sbjct: 22 ANCQYRTVLIYGGVASQGANDLTAFKTVGECKNGCFVKNDCFLALFVIDKCIFFSY 77
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 265 CCSFSQLSVF--NKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIF 399
C S +++F N + QF+ + H + L FYS F+ +IF
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLVFYSASTFFIYLIF 306
>AF067613-11|AAN73862.2| 334|Caenorhabditis elegans Serpentine
receptor, class z protein19 protein.
Length = 334
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 313 FINIIVFKHSYCIFLSFYSRDCFYSIVIFHRLLFFEYIFIVDVCRYFNK 459
F II K CI +++ F ++V F+ +LF Y+++ R +K
Sbjct: 14 FGKIIGVKCDNCILINYIFISVFATLVAFNLVLFTLYVYVFKTNRERDK 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,112,216
Number of Sequences: 27780
Number of extensions: 128207
Number of successful extensions: 413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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