Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A19
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 66  LFVSIICYIIVLMG 25
           LF++I+C++  L+G
Sbjct: 417 LFIAIVCFVSYLIG 430


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 66  LFVSIICYIIVLMG 25
           LF++I+C++  L+G
Sbjct: 470 LFIAIVCFVSYLIG 483


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 70  LAFCFYYLLHYCPNGLL 20
           +  CF Y+L + P G++
Sbjct: 277 ITICFLYVLSWTPYGVM 293


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 335 SIPIAFFYPFILVTAFTV 388
           S  IAF YP +L+   TV
Sbjct: 815 SYMIAFAYPIMLIVVCTV 832


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 58  FYYLLHYCPNGLLVLP 11
           FYY+  Y P   +++P
Sbjct: 413 FYYIEEYLPGNGVIIP 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,751
Number of Sequences: 438
Number of extensions: 1753
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)