Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A18
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    69   5e-13
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   2.9  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    26   3.8  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   5.0  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   5.0  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   5.0  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   5.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.7  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 68.5 bits (160), Expect = 5e-13
 Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
 Frame = +1

Query: 145 IDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNPE------ 306
           IDA+L ++ +   +QFGY  LVGT+PFNSFLSGFIS V  FV+ V  R+ +  +      
Sbjct: 29  IDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVGQFVITVGFRMALTQQELQSSS 88

Query: 307 NKNEFQGLSA-ERGFADFIFAHLVLH 381
           +K +   +S  +R F +F F+ LVLH
Sbjct: 89  SKKKSPVVSPYKRAFLEFCFSSLVLH 114


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +1

Query: 43  YXCKXNXITMSSLTAVIPKLYQAXXXXXXXXXXIIDAYLFYIFLTAVIQFGYCCLVG 213
           Y C+ + I  + L    PK+  +           +D YL+YI ++ +    Y   +G
Sbjct: 541 YDCR-DYILGAGLCKAQPKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLG 596


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
 Frame = -3

Query: 308 FSGLTCSRRHTPRTKQLTVDIKP-------LKKELNGKVPTRQ---Q*PNCMTAVRKI*K 159
           F G+T  RRH    K    DI P       L KE+N      Q   + P+   ++R   +
Sbjct: 36  FEGVTLQRRHVKGMKSYGSDITPRRPKQLGLPKEVNTSECIDQGSWRKPSAFESLRSYSR 95

Query: 158 RYASIILSXLGV 123
           +++  I S +GV
Sbjct: 96  KFSKRIFSFIGV 107


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 79   LTAVIPKLYQAXXXXXXXXXXIIDAYLFYIFLTAVI-QFGYCCLVGTFPFNSFLSGFIST 255
            L A IPK  QA          I ++YL  IF T +  +F Y  +V + PF  F   +IST
Sbjct: 1041 LRASIPKTLQAKIGLEKMLERIPESYLRAIFSTYLASRFVYQHVVSSDPFAFF--DYIST 1098


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 216 FPI*FFLKWFYIYSKLL 266
           FP  FFL WFY++  +L
Sbjct: 293 FPFLFFLFWFYMHFNIL 309


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 280 CLRLQVNPENKNEFQGLSAERGFADF 357
           C++ QV+P+  NEF   +A++    F
Sbjct: 356 CVKFQVDPDKPNEFLAGTADKRILQF 381


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +1

Query: 157 LFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSC----FVLGVCL 285
           L  +F+  ++ +G C +  T PF      F  T S     F+LG C+
Sbjct: 448 LLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCI 494


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -2

Query: 135 LLRSFRCXCLIQFW-NYS 85
           LLR + C C+ Q W NYS
Sbjct: 636 LLRQWACLCISQLWENYS 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,993
Number of Sequences: 5004
Number of extensions: 32799
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)