Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_A18
(514 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89080-1|CAA61451.1| 113|Caenorhabditis elegans dad-1 protein. 126 9e-30
AF039713-4|AAB96727.1| 113|Caenorhabditis elegans Dad (defender... 126 9e-30
U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z79600-9|CAJ85761.1| 110|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z79600-8|CAJ85760.1| 147|Caenorhabditis elegans Hypothetical pr... 28 4.5
AC025715-3|AAU87815.1| 534|Caenorhabditis elegans Hypothetical ... 28 4.5
U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide tr... 27 7.9
AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 27 7.9
AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity ... 27 7.9
AC199171-2|ABO33268.1| 297|Caenorhabditis elegans Hypothetical ... 27 7.9
>X89080-1|CAA61451.1| 113|Caenorhabditis elegans dad-1 protein.
Length = 113
Score = 126 bits (304), Expect = 9e-30
Identities = 59/103 (57%), Positives = 72/103 (69%)
Frame = +1
Query: 73 SSLTAVIPKLYQAXXXXXXXXXXIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 252
+ + V+ KL+ IIDAY+ YI T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3 AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62
Query: 253 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 381
TV+ FVL CLR+QVN EN++EF +S ER FADFIFA+L+LH
Sbjct: 63 TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILH 105
>AF039713-4|AAB96727.1| 113|Caenorhabditis elegans Dad (defender
against apoptoticdeath) homolog protein 1 protein.
Length = 113
Score = 126 bits (304), Expect = 9e-30
Identities = 59/103 (57%), Positives = 72/103 (69%)
Frame = +1
Query: 73 SSLTAVIPKLYQAXXXXXXXXXXIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 252
+ + V+ KL+ IIDAY+ YI T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3 AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62
Query: 253 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 381
TV+ FVL CLR+QVN EN++EF +S ER FADFIFA+L+LH
Sbjct: 63 TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILH 105
>U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical
protein D2096.5 protein.
Length = 137
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 157 LFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFV 270
L +F+ + LV TF FN FLS +STV FV
Sbjct: 8 LLSVFIFLLFSSEVEALVTTFHFNGFLSCGLSTVDFFV 45
>Z79600-9|CAJ85761.1| 110|Caenorhabditis elegans Hypothetical
protein F59C6.14b protein.
Length = 110
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 145 IDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 252
IDA +F +T ++ YC G F +L GF+S
Sbjct: 75 IDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 109
>Z79600-8|CAJ85760.1| 147|Caenorhabditis elegans Hypothetical
protein F59C6.14a protein.
Length = 147
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 145 IDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 252
IDA +F +T ++ YC G F +L GF+S
Sbjct: 112 IDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 146
>AC025715-3|AAU87815.1| 534|Caenorhabditis elegans Hypothetical
protein Y38F2AR.5 protein.
Length = 534
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = -3
Query: 380 CNTRCANMKSAKPRSALSPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKELNGKVPTRQ 201
C+T C + + +S WN+F L S + L V+ P+KK P
Sbjct: 304 CSTDCKRIVEQRVKSVHKDWNNFSRLSLADSDIVRTSSNPLKVEYPPIKKFGGTNAPKSN 363
Query: 200 Q*PNCMTAVRKI*KR 156
+ N R+I K+
Sbjct: 364 R--NTQKTARQIPKK 376
>U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide
transporter protein 2 protein.
Length = 835
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 211 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKN 315
G+ P +L +++T C + CL LQ NKN
Sbjct: 271 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 305
>AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical
protein Y113G7B.7 protein.
Length = 314
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 228 IKWESADKATVAELYDRSKENIEKVCINYFK 136
I + D+ +LY+RS++ IEK +N K
Sbjct: 83 ISYTDRDEGCTVKLYNRSEKYIEKTALNAMK 113
>AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity
peptide transporter protein.
Length = 796
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 211 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKN 315
G+ P +L +++T C + CL LQ NKN
Sbjct: 232 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 266
>AC199171-2|ABO33268.1| 297|Caenorhabditis elegans Hypothetical
protein VY35H6BL.1 protein.
Length = 297
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 380 CNTRCANMKSAKPRSALSPWNSFLFSGLTCSRRHTPRTKQ-LTVDIKPLKK 231
C+T C + + +S WN+ FS L+ + RT L V+ P+KK
Sbjct: 91 CSTDCKRIVEQRVKSVHKDWNN--FSRLSLADSDIVRTSNPLKVEYPPIKK 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,423,531
Number of Sequences: 27780
Number of extensions: 185001
Number of successful extensions: 543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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