Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A17
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   1.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   7.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   7.0  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   9.3  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 766 GIKVSNVAIVLSLNWRKTLFSLDWYLTNQVLSTWRAP 656
           G+K   +   L+ N   T+ ++ W L   VL +W++P
Sbjct: 265 GLKRDTIEFNLASNKNTTIGTISWLLNLFVLGSWKSP 301


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 355 KKFMKLINYNFITKLSPRIVLIENNCS 435
           +K   +I Y+F   LS R+V ++ +CS
Sbjct: 854 RKLTSIIKYSFGIDLSYRVVQVDGSCS 880


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 373 INYNFITKLSPRIVLIENNCSMHSSGN 453
           IN+N +T+L P I  ++N   + +SGN
Sbjct: 188 INHNNLTRLPPEIGKLKNLVILDASGN 214


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 313 IVTNKYVHTSK*LIKKFMKLI 375
           ++  KYVH S  LIKK MK +
Sbjct: 611 LMEEKYVHYSHYLIKKIMKYV 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,987
Number of Sequences: 5004
Number of extensions: 56280
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)