Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A17
         (787 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001457-1|AAH01457.1|  331|Homo sapiens TruB pseudouridine (psi...    34   0.51 
AL359091-2|CAI13485.1|  331|Homo sapiens TruB pseudouridine (psi...    34   0.51 
AK001956-1|BAA92001.1|  331|Homo sapiens protein ( Homo sapiens ...    34   0.51 
AF131848-1|AAD20059.1|  331|Homo sapiens Unknown protein.              34   0.51 
DQ176850-1|ABA12209.1| 1416|Homo sapiens phospholipase C-eta2 pr...    33   1.2  
BC128207-1|AAI28208.1| 1032|Homo sapiens PLCH2 protein protein.        33   1.2  
BC043358-1|AAH43358.1| 1238|Homo sapiens PLCH2 protein protein.        33   1.2  
AK122589-1|BAC56930.1| 1129|Homo sapiens FLJ00414 protein protein.     33   1.2  
AB007919-1|BAA32295.3| 1182|Homo sapiens KIAA0450 protein protein.     33   1.2  

>BC001457-1|AAH01457.1|  331|Homo sapiens TruB pseudouridine (psi)
           synthase homolog 2 (E. coli) protein.
          Length = 331

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +2

Query: 5   RPMMPRPLXSTYIICIYFSIKEFVLKIELLYLTTAIKSLNKCLNNSDT*IKT 160
           RPM   P+  T I C+YF+  EF+L+++ ++ T   K L K ++     +KT
Sbjct: 199 RPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQ--KELRKLVHEIGLELKT 248


>AL359091-2|CAI13485.1|  331|Homo sapiens TruB pseudouridine (psi)
           synthase homolog 2 (E. coli) protein.
          Length = 331

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +2

Query: 5   RPMMPRPLXSTYIICIYFSIKEFVLKIELLYLTTAIKSLNKCLNNSDT*IKT 160
           RPM   P+  T I C+YF+  EF+L+++ ++ T   K L K ++     +KT
Sbjct: 199 RPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQ--KELRKLVHEIGLELKT 248


>AK001956-1|BAA92001.1|  331|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11094 fis, clone PLACE1005373, weakly similar to
           TRNA PSEUDOURIDINE SYNTHASE B (EC 4.2.1.70). ).
          Length = 331

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +2

Query: 5   RPMMPRPLXSTYIICIYFSIKEFVLKIELLYLTTAIKSLNKCLNNSDT*IKT 160
           RPM   P+  T I C+YF+  EF+L+++ ++ T   K L K ++     +KT
Sbjct: 199 RPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQ--KELRKLVHEIGLELKT 248


>AF131848-1|AAD20059.1|  331|Homo sapiens Unknown protein.
          Length = 331

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +2

Query: 5   RPMMPRPLXSTYIICIYFSIKEFVLKIELLYLTTAIKSLNKCLNNSDT*IKT 160
           RPM   P+  T I C+YF+  EF+L+++ ++ T   K L K ++     +KT
Sbjct: 199 RPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQ--KELRKLVHEIGLELKT 248


>DQ176850-1|ABA12209.1| 1416|Homo sapiens phospholipase C-eta2
           protein.
          Length = 1416

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 IVTNKYVHTSK*LIKKFMKLIN-YNFITKLSPRIVLIENNCSM 438
           IV + Y  TSK L K  ++ IN Y FI    P I+ IEN+CS+
Sbjct: 383 IVHHGYTLTSKILFKDVIETINKYAFIKNEYPVILSIENHCSV 425


>BC128207-1|AAI28208.1| 1032|Homo sapiens PLCH2 protein protein.
          Length = 1032

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 IVTNKYVHTSK*LIKKFMKLIN-YNFITKLSPRIVLIENNCSM 438
           IV + Y  TSK L K  ++ IN Y FI    P I+ IEN+CS+
Sbjct: 268 IVHHGYTLTSKILFKDVIETINKYAFIKNEYPVILSIENHCSV 310


>BC043358-1|AAH43358.1| 1238|Homo sapiens PLCH2 protein protein.
          Length = 1238

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 IVTNKYVHTSK*LIKKFMKLIN-YNFITKLSPRIVLIENNCSM 438
           IV + Y  TSK L K  ++ IN Y FI    P I+ IEN+CS+
Sbjct: 241 IVHHGYTLTSKILFKDVIETINKYAFIKNEYPVILSIENHCSV 283


>AK122589-1|BAC56930.1| 1129|Homo sapiens FLJ00414 protein protein.
          Length = 1129

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 IVTNKYVHTSK*LIKKFMKLIN-YNFITKLSPRIVLIENNCSM 438
           IV + Y  TSK L K  ++ IN Y FI    P I+ IEN+CS+
Sbjct: 301 IVHHGYTLTSKILFKDVIETINKYAFIKNEYPVILSIENHCSV 343


>AB007919-1|BAA32295.3| 1182|Homo sapiens KIAA0450 protein protein.
          Length = 1182

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 IVTNKYVHTSK*LIKKFMKLIN-YNFITKLSPRIVLIENNCSM 438
           IV + Y  TSK L K  ++ IN Y FI    P I+ IEN+CS+
Sbjct: 409 IVHHGYTLTSKILFKDVIETINKYAFIKNEYPVILSIENHCSV 451


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,074,454
Number of Sequences: 237096
Number of extensions: 1616264
Number of successful extensions: 4313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4313
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)