Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A17
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    33   0.31 
U00047-3|AAA50689.2|  225|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
           protein T01E8.3 protein.
          Length = 1299

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 IVTNKYVHTSK*LIKKFMKLI-NYNFITKLSPRIVLIENNCSM 438
           ++ + Y  TSK L++  + +I +Y F+T   P I+ IE+NCS+
Sbjct: 365 VIYHGYTMTSKILLRDVLHVIRHYAFVTSEYPVILSIEDNCSV 407


>U00047-3|AAA50689.2|  225|Caenorhabditis elegans Hypothetical
           protein ZK418.5 protein.
          Length = 225

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 425 IIALCIVLVIIYENKQKCVTLFNWGMSFEIVFFRITYKLETTFVILSRATVFVKSTN 595
           I+A+C+    +Y+  Q   +L+ W     ++ FR  Y + T  +     TV V S N
Sbjct: 169 ILAMCVFSTFVYQTVQHTFSLYGW----SLLAFRFAYSIATAIL-----TVVVYSAN 216


>U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical
           protein C10A4.7 protein.
          Length = 192

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 348 LF*CMYIFISDNKLISLIKYLLIANIDYYLNKLFQILFAT 229
           LF  + I I  N  I+    L++ N DYY+N +  I+  T
Sbjct: 85  LFAFLLITIFKNIFINSSILLIVTNTDYYINTVHNIIMGT 124


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/85 (22%), Positives = 36/85 (42%)
 Frame = -1

Query: 262 FK*IVSNFICYILFNYVYDVFDMGISVLSMVIIKCLYLCITVI*TFVQRFYGSSQIQQFN 83
           FK +   F C +   Y+  + + G +V S      L   +        R+Y    +Q+FN
Sbjct: 230 FKSLCPEFYCNLFKTYILPLIEYGSAVYSPKPSSSLSTLLEK----PLRWYSQKVLQKFN 285

Query: 82  FQYKFFDAKINTYNVGTX*GARHHR 8
             Y  ++ ++ + N+ +    RH R
Sbjct: 286 VSYSLYNDRLKSLNLHS---IRHRR 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,917,331
Number of Sequences: 27780
Number of extensions: 305525
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)