Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A14
         (331 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    33   0.16 
BC016950-1|AAH16950.1|   75|Homo sapiens KLHL23 protein protein.       31   1.1  
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    29   3.5  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 39  LYVLCQINVHLIN*KIYTFRFTRFYLKDFLSVHLSRYIYIYVPMY 173
           +Y+   + ++L    IY + FT  YL  F+ +++  YIY+Y+ +Y
Sbjct: 25  IYIYVYVYIYLY---IYFYIFTYIYLYIFIYIYICLYIYLYIYLY 66



 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 85  YIRSDLHVFILRTSYLYI*VGIFTYMYLCTNSIFLLHV 198
           Y+   ++++I    YLYI + IFTY+Y+  +    LH+
Sbjct: 46  YLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHI 83



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  KIYTFRFTRFYLKDFLSVHLSRYIYIYVPMY*LDFF 188
           K+Y + +   Y+  F+ + +  YIY+YV +Y   +F
Sbjct: 4   KLYVYIYMFMYIFIFIYIFIYIYIYVYVYIYLYIYF 39


>BC016950-1|AAH16950.1|   75|Homo sapiens KLHL23 protein protein.
          Length = 75

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 85  YIRSDLHVFILRTSYLYI*VGIFTYMYLCTNSIFLLH 195
           Y+ + ++VFI   SY+   V I+ Y Y+C  +   +H
Sbjct: 4   YVYTHIYVFICMRSYIRAYVYIYVYTYVCMYTYMCIH 40



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  YVPIYTFLS*GLPICTFK*VYLHICTYVLTRFFYYM 196
           YV +YT++     +C    VY+++C Y+ T    Y+
Sbjct: 30  YVCMYTYMCIHTCVCIHICVYIYMCVYIYTYIRIYV 65


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +1

Query: 82  KYIRSDLHVFILRTSYLYI*VGIFTYMYLCTNSIFLLHV 198
           +Y+ +  H++  +  Y+Y  + ++TY Y+C +    +H+
Sbjct: 39  RYMCTRKHMYTHKHMYVYTYIYVYTYTYVCVHIHICVHI 77



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 84  IYTFRFTRFYLKDFLSVHLSRYIYIYVPMY 173
           +YT+ +   Y    + VH++ Y+ IYV +Y
Sbjct: 95  VYTYIYVYIYTHIHICVHINMYVSIYVYIY 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,642,502
Number of Sequences: 237096
Number of extensions: 533291
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)