Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A14
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    28   1.8  
AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine r...    26   7.3  
AF039053-12|AAC25872.3|  289|Caenorhabditis elegans Serpentine r...    25   9.7  
AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    25   9.7  

>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 57  INVHLIN*KIYTFRFTRFYLKDFLSVHLSRYIYIYVPMY 173
           +NVH I+  +Y     RF+ + ++ V     IY Y+P +
Sbjct: 125 LNVHRISSVLYPMSCERFWFRYYVLVSFGFCIYSYLPRF 163


>AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 57 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 57  INVHLIN*KIYTFRFTRFYLKDFLSVHLSRYIYIYVPMY 173
           +N+H I+  ++     +F+ + ++ V L+  IY Y+P +
Sbjct: 123 LNIHRISSILFPMSCEKFWCRYYILVTLAFCIYSYLPRF 161


>AF039053-12|AAC25872.3|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 18 protein.
          Length = 289

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 97  DLHVFILRTSYLYI*VGIFTYMYLCTNSIFLLHVVENKIN 216
           D+HV +  ++ +   VGI + +Y    +I+ L  VE K N
Sbjct: 2   DVHVMMNTSALMMTLVGIGSSLYTSVLNIYFLKKVERKKN 41


>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +2

Query: 149 YLHICTYVLTRFFYYML 199
           ++H C YV+T+ F++++
Sbjct: 94  FIHYCLYVITQVFHFLI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,122,178
Number of Sequences: 27780
Number of extensions: 94074
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)