Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_A13
(477 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 89 2e-19
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 36 0.002
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.28
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.64
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 1.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 2.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.4
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 7.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 25 7.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.9
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 89.4 bits (212), Expect = 2e-19
Identities = 34/64 (53%), Positives = 43/64 (67%)
Frame = +3
Query: 102 RFPXQNQPRHCYQSYVDFHRCQXVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTF 281
RFP NQ +HC+QSY+D+ RC +GE + PC F Y+SLCP EWV++WD QR GTF
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 282 AGRI 293
I
Sbjct: 80 PAPI 83
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 36.3 bits (80), Expect = 0.002
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Frame = +1
Query: 4 SXNQSKSTAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAK 183
S + S STA SSS+ + S+ S S +++ S +++ + +ST++ ++
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314
Query: 184 NTSHATISRECTGLSAPMS----GSTSGTTSAPKAPSPVGFRS*T 306
++ +T+S S+ S S+S +S+ +PS F S T
Sbjct: 315 SSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTT 359
Score = 30.3 bits (65), Expect = 0.16
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +1
Query: 22 STAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAKNTSHAT 201
S++ SSS+ S S SP + + IS +++ +++ST++ + ++S ++
Sbjct: 275 SSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSS 334
Query: 202 I-----SRECTGLSAPMSGSTSGTTSAPKAPS 282
S + S+P S S S TTS+ K+ S
Sbjct: 335 SPTSSSSTISSSSSSPSSSSFSSTTSSSKSSS 366
Score = 27.5 bits (58), Expect = 1.1
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +1
Query: 4 SXNQSKSTAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRG-TATKVTWTSTVAXKFAA 180
S + S S++ + ++ L S+ P S S SL+ S TA+ + +S++ ++
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
Query: 181 KNTS----HATISRECTGLSAPMSGSTSGTTSAPKAPS 282
++S +TIS + S+P S S++ ++S+ + S
Sbjct: 279 SSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.28
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 130 TATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 288
T++ V TST A NTS + S S P++ ST TS P S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 28.7 bits (61), Expect = 0.48
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 130 TATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 288
T++ V TST A NTS S S P++ ST TS P S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 28.7 bits (61), Expect = 0.48
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 130 TATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 288
T++ V TST A NTS S S P++ ST TS P S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
Score = 26.6 bits (56), Expect = 1.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 130 TATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 288
T++ V TST NTS S S P++ ST TS P S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229
Score = 26.6 bits (56), Expect = 1.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 130 TATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 288
T++ V TST NTS S S P++ ST TS P S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541
Score = 25.0 bits (52), Expect = 5.9
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 130 TATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 288
T++ V TST NTS S S P++ ST +S P S V
Sbjct: 1357 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 1409
Score = 25.0 bits (52), Expect = 5.9
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 130 TATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 288
T++ V TST NTS S S P++ ST +S P S V
Sbjct: 2197 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2249
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 0.64
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1
Query: 4 SXNQSKSTAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXK--FA 177
S N + S +SS++ ++ S S SL + TAT + +STV+
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSSLAS--SSLNSTTSATATSSSISSTVSSSTPLT 256
Query: 178 AKNTSHATISRECTGLSAPMSGSTSGTTSAPKA 276
+ N++ A S T SA + S+ +S P +
Sbjct: 257 SSNSTTAATSASATSSSAQYNTSSLLPSSTPSS 289
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/83 (21%), Positives = 37/83 (44%)
Frame = +1
Query: 22 STAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAKNTSHAT 201
S+ S+++ ++ P S + + S + + T TS + + N++ AT
Sbjct: 325 SSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSAT 384
Query: 202 ISRECTGLSAPMSGSTSGTTSAP 270
+ SA + STS +++AP
Sbjct: 385 SASSTPLTSANSTTSTSVSSTAP 407
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.5 bits (58), Expect = 1.1
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +1
Query: 64 NRPPXSKQHLSPHGSLTKIS-RGTATKVTWTSTVAXKFAAKNT--SHATISRECTGLSAP 234
NRPP P+ + T T + +TV+ A +T S A+ + SAP
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
Query: 235 MSGSTSGTTSAPKAPSP 285
++ + S ++ P P P
Sbjct: 1084 VANNVSKPSAVPPPPPP 1100
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.5
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 58 CSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPM 237
CS+RP ++ +S + + +S ++ + TST + TSH + S SA
Sbjct: 579 CSSRP---EETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS-SSSVHSSSAHS 634
Query: 238 SGSTSGTTSAP 270
S S S + S P
Sbjct: 635 SSSRSSSMSLP 645
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 2.6
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +1
Query: 4 SXNQSKSTAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAK 183
S S ++ SSS+ S+RP S ++ S T IS T T + +S+ + + +
Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSS 271
Query: 184 NTSHATISRECTGLSAPMSGSTSG 255
+ A + + + ++ +G+ G
Sbjct: 272 TAALALNASKASNHTSLNAGAIVG 295
Score = 24.6 bits (51), Expect = 7.9
Identities = 23/99 (23%), Positives = 43/99 (43%)
Frame = +1
Query: 4 SXNQSKSTAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAK 183
S + S S++ SSS+ S+ P + S H S + S +++ +S + F
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSS--SSSFITT 243
Query: 184 NTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS 300
+S IS T P S S+S ++ P + + + +
Sbjct: 244 MSSSTFIS---TVTVTPSSSSSSTSSEVPSSTAALALNA 279
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 3.4
Identities = 17/81 (20%), Positives = 30/81 (37%)
Frame = +1
Query: 10 NQSKSTAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAKNT 189
++ S+ S S PP S SP + T + GT+ TS++ K +
Sbjct: 235 DREASSKNCLSKALAFSSIEPPASSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTS 294
Query: 190 SHATISRECTGLSAPMSGSTS 252
+ + S P + + S
Sbjct: 295 KTTDLLIAASKKSLPSNSTPS 315
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 20 SQRLNHHQQ-SACSAQIARRPQNSTFRPTVPXPKSAAA 130
S+R++ H + SA ++AR+P ++ PT P + +A
Sbjct: 468 SKRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSA 505
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 7.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 258 CPTCRPTHWGRETCTL 211
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 22 STAQSSSAICLLCSNRPPXSKQHLSPHGSLTK 117
S + S SA+ L S SK+H SPH K
Sbjct: 187 SESASPSALQALDSTAAGSSKEHSSPHDETVK 218
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 165 GNGGSPRNFGSSAAADFGXGTVG 97
G GGS FG ++ FG G+ G
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRG 168
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 7.9
Identities = 25/93 (26%), Positives = 40/93 (43%)
Frame = +1
Query: 4 SXNQSKSTAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAK 183
S + S S+ SSS+ S+ S S S +K S ++ TST A+
Sbjct: 179 SSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTP---ASS 235
Query: 184 NTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 282
++S A +S T + S ++S T+S S
Sbjct: 236 SSSGAIVSNAKTASTDDSSSASSATSSVSSVVS 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,462
Number of Sequences: 5004
Number of extensions: 28129
Number of successful extensions: 109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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