Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_A13
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 90 1e-18
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 89 1e-18
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 69 3e-12
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 58 5e-09
05_05_0107 + 22442118-22443437,22443775-22443873 34 0.052
09_06_0272 - 21962495-21962524,21962742-21962918 31 0.64
05_05_0223 - 23406814-23407477,23407597-23407919 31 0.64
02_05_1072 - 33878676-33878747,33878926-33879949,33880684-338808... 30 1.1
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 29 1.9
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 29 2.6
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 29 2.6
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 29 2.6
02_05_0546 + 29889861-29890182,29891057-29892798 29 2.6
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551... 28 3.4
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 28 3.4
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 4.5
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 27 5.9
04_04_0056 + 22406872-22407258,22408405-22409310 27 5.9
01_02_0109 + 11206740-11207693 27 5.9
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 89.8 bits (213), Expect = 1e-18
Identities = 36/68 (52%), Positives = 44/68 (64%)
Frame = +3
Query: 84 TAPFAPRFPXQNQPRHCYQSYVDFHRCQXVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 263
TAP RFP NQ RHC+ YV++HRC +GE C F + YRSLCP EWV++W+ Q
Sbjct: 100 TAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQ 159
Query: 264 RAEGTFAG 287
R GTF G
Sbjct: 160 RENGTFPG 167
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 89.4 bits (212), Expect = 1e-18
Identities = 34/68 (50%), Positives = 45/68 (66%)
Frame = +3
Query: 84 TAPFAPRFPXQNQPRHCYQSYVDFHRCQXVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 263
TAP RFP NQ RHC+ Y+++HRC +GE C F + YRSLCP+EW+++W+ Q
Sbjct: 186 TAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEWIERWNEQ 245
Query: 264 RAEGTFAG 287
R GTF G
Sbjct: 246 RENGTFPG 253
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 68.5 bits (160), Expect = 3e-12
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +3
Query: 84 TAPFAPRFPXQNQPRHCYQSYVDFHRCQXVRGEKYEPCYYFKRVYRSLCPNEW 242
TAP RFP NQ RHC+ Y+++HRC +GE C F + YRSLCP EW
Sbjct: 23 TAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 57.6 bits (133), Expect = 5e-09
Identities = 21/42 (50%), Positives = 28/42 (66%)
Frame = +3
Query: 162 CQXVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 287
C +GE + C + + YRSLCP EW+++W QRA GTFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>05_05_0107 + 22442118-22443437,22443775-22443873
Length = 472
Score = 34.3 bits (75), Expect = 0.052
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 28 AQSSSAICLLCSNRPPXSKQHLSPHGSLTKIS-----RGTATKVTWTSTVAXKFAAKNTS 192
++S SAI + S PP + SP + TK+S R TA T+ A AA T+
Sbjct: 358 SRSDSAIVAVASAPPPAALPAESPESAPTKLSSPPALRDTAGNANHTAAAAAVAAAAATT 417
Query: 193 HATISRECTGL 225
TI R C L
Sbjct: 418 KPTIGRWCIAL 428
>09_06_0272 - 21962495-21962524,21962742-21962918
Length = 68
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 300 GSKSYRRRCLRRAGCPTCRPTHWGRET 220
G +R++ G P CRP HW R T
Sbjct: 11 GGGDFRQKVWSMTGGPYCRPVHWRRNT 37
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 30.7 bits (66), Expect = 0.64
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 172 FAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 282
FA+ N A++S C+G A + TS +S P+AP+
Sbjct: 219 FASSNGGDASVSWPCSGDDAQNNSETSHESSPPEAPA 255
>02_05_1072 -
33878676-33878747,33878926-33879949,33880684-33880804,
33881150-33881560,33881781-33881933,33882321-33882468
Length = 642
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 79 SKQHLS-PHGSLTKISRGTATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSG 255
+K HLS P + +G AT + T + K+ + T + GLS MSG+
Sbjct: 314 NKYHLSLPGNQKGNLGQGLATSLGQTQ-MQQKWIHEETDDLSTILSGNGLSNGMSGTLQS 372
Query: 256 TTSAPKAP 279
TS+P P
Sbjct: 373 VTSSPLLP 380
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 175 AAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 288
A K T+ A + + T +AP S + S +P+APSPV
Sbjct: 39 APKATAPAGPAPKATATAAPSSKAPSPAAPSPEAPSPV 76
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 28.7 bits (61), Expect = 2.6
Identities = 23/81 (28%), Positives = 30/81 (37%)
Frame = +1
Query: 70 PPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGST 249
PP S L SLTK S+ A A+ +SHA+ + A +G
Sbjct: 76 PPASAALLRRRSSLTKPKSRFVEPAAPPSSAAAAAASSTSSHASPAH-----PAAAAGGG 130
Query: 250 SGTTSAPKAPSPVGFRS*TFP 312
SG S P P+ FP
Sbjct: 131 SGAASTPHTPAEADDEEEVFP 151
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 348 DLIKTNRNKLKHRERLGSKSYR 283
+L KTNR+K+K+ GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 118 ISRGTATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTS 252
+S+ T T V W V K + +S C+G++A G S
Sbjct: 190 LSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVS 234
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = +1
Query: 64 NRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSG 243
N PP + + +G+L K T + + + AKN T S + T P++G
Sbjct: 98 NGPPNLVRTGATYGNLNKSFHDTCARSNLNAVQSSNPVAKNQDTKTASIDATA-GNPLTG 156
Query: 244 STSGTTSAPKAPSP 285
+ + AP P P
Sbjct: 157 HHATPSVAPVPPKP 170
>12_02_1088 -
25954506-25954652,25954769-25954918,25955011-25955116,
25955247-25955569,25955656-25955790,25956310-25956444,
25956445-25956525,25956619-25956807,25956935-25957127,
25957244-25957350,25957457-25957531,25957619-25957774,
25957968-25958051,25958152-25958265,25958345-25958440,
25958543-25958633,25958721-25958836,25958934-25959093,
25960390-25960634
Length = 900
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 118 ISRGTATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTS 252
+S+ T T V W V K + +S C+G++A G S
Sbjct: 187 MSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVS 231
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 201 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNVPD 314
+F R ++ L PNEW++ ++ + +G + L++ D
Sbjct: 879 HFLRGFQQLIPNEWINMFNEHEFQVLISGSLESLDIDD 916
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/91 (30%), Positives = 39/91 (42%)
Frame = +1
Query: 13 QSKSTAQSSSAICLLCSNRPPXSKQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAKNTS 192
Q+K+ QS S SN P S + P +T +S G S + A +
Sbjct: 1346 QAKAPMQSLST-----SNHQPQSSSKMGP---VTNMSTGGGD----LSRSSNAPVASGSP 1393
Query: 193 HATISRECTGLSAPMSGSTSGTTSAPKAPSP 285
++S+ TG S P SGS G A + PSP
Sbjct: 1394 SNSVSKS-TGGSPPASGSAKGVPPAVQLPSP 1423
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/59 (25%), Positives = 22/59 (37%)
Frame = +1
Query: 82 KQHLSPHGSLTKISRGTATKVTWTSTVAXKFAAKNTSHATISRECTGLSAPMSGSTSGT 258
K+ P S + G +V W V + + ++R C GL A SGT
Sbjct: 543 KKKKKPKNSDADLDGGPLARVRWFRVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGT 601
>04_04_0056 + 22406872-22407258,22408405-22409310
Length = 430
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 115 WXGN-RGAKGAVLRX-AGDLSRAGRLLMMIEPLTWI 14
W G R A A LR A DLSRAGR +E W+
Sbjct: 99 WAGEGRAASAAELRGIARDLSRAGRYKHALEVAEWM 134
>01_02_0109 + 11206740-11207693
Length = 317
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -1
Query: 174 ELXGNGGSPRNFGSSAA---ADFGXGTVGRKVL 85
++ G GG PR +G AA A G G G++VL
Sbjct: 161 DIEGGGGDPRYYGDLAAYLKAYSGKGAAGKEVL 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,233,097
Number of Sequences: 37544
Number of extensions: 210244
Number of successful extensions: 822
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -