Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A09
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0318 + 14296001-14296630                                         29   2.1  
04_03_0317 + 14292003-14292632                                         29   2.1  
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609...    28   4.8  
04_03_0377 - 15121777-15122406                                         27   6.4  
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    27   8.5  

>04_03_0318 + 14296001-14296630
          Length = 209

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 18  VAVSKSLKALTQPKMSKFTLLFLVLACFIMAEAQLTFTSSWGGKR 152
           V   KSLK LT+ K+S+F  LFL++   +  +A   + S W   R
Sbjct: 19  VTFMKSLKGLTK-KVSEFATLFLMVYGEVEVQATKVWPSVWEATR 62


>04_03_0317 + 14292003-14292632
          Length = 209

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 18  VAVSKSLKALTQPKMSKFTLLFLVLACFIMAEAQLTFTSSWGGKR 152
           V   KSLK LT+ K+S+F  LFL++   +  +A   + S W   R
Sbjct: 19  VTFMKSLKGLTK-KVSEFATLFLMVYGEVEVQATKVWPSVWEATR 62


>07_01_1104 -
           10160493-10160599,10160632-10160637,10160930-10160975,
           10161053-10161190,10161275-10161679,10163193-10163330,
           10163401-10163482,10163596-10163943,10164294-10164655,
           10165154-10165209,10166428-10166558,10166564-10166628,
           10169191-10169631
          Length = 774

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 209 INRRQGFIVPAGHSAGDGSPFSTPAGCESELGFGHYEASQNKEEKREFGHFWL 51
           +N   G++ P  +SAGD     TP    ++   G   ASQ+     E G FWL
Sbjct: 167 LNLDYGYVYPMFYSAGDLLATGTPKVHVNQKNTGSVNASQDILNLDETG-FWL 218


>04_03_0377 - 15121777-15122406
          Length = 209

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 18  VAVSKSLKALTQPKMSKFTLLFLVLACFIMAEAQLTFTSSWGGKR 152
           V   KSLK LT+ K+S+F  LF ++   +  +A   + S W   R
Sbjct: 19  VTFMKSLKGLTK-KVSEFATLFFMVYGEVEVQATKVWPSVWEATR 62


>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 184 TMNPWRLFINLFRMKLKNSCYARSLKPTPPKRKHRQN 294
           TM  W++FI  F +   + C+ + +K +     H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,135,802
Number of Sequences: 37544
Number of extensions: 237127
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)