Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A07
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    28   1.3  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   3.9  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.9  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   6.7  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    26   6.7  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   8.9  

>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 131 CADSTVHHSSSTANGP 178
           CADS++H  SST NGP
Sbjct: 368 CADSSIHLYSSTNNGP 383


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 656 TKSFVFVCFK*VPTQRLKNNDSLETFKF 573
           +K F+F C   + +QR+K   + E FKF
Sbjct: 663 SKDFIFNCVNSLRSQRMKMVQNFEQFKF 690


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 555 NYERNSINFINAQYVGTQ*HIIPTLR 478
           NYE       N  YVGT  ++ P+LR
Sbjct: 319 NYEARKFGIKNGMYVGTAKNLCPSLR 344


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 344 CGVSAAFAAIRNASTGPAT*TAKE*STQVGFRRRYIFYSGLDGRSATWAG 195
           CGV + F+++R   +G  +  A      + F    +F+  LDG+ A W G
Sbjct: 56  CGVMSIFSSLRYCLSGQQS--AFHLWNAMYFMPFALFFDFLDGKVARWRG 103


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 730 LNKSFEEIKFLRKCLLIEEXIQNQKQN 650
           L+K+ +EIKFL+   L  E +  Q+QN
Sbjct: 63  LHKNLDEIKFLQNEKLNNEKLLEQEQN 89


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 295 GPVLAFLIAAKAAETPHTTVRTAARISGATSVNHLNFC 408
           GP + +    ++   P+T+  +  R+S  TS+   +FC
Sbjct: 340 GPPMLYKFPQRSYTAPNTSFNSQRRMSSITSLPTASFC 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,127
Number of Sequences: 5004
Number of extensions: 50011
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)