Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A07
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0783 - 28040828-28041615,28041942-28043589                       29   4.0  
08_01_0545 - 4740883-4740902,4741169-4741286                           29   5.3  
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433...    29   5.3  
02_05_0883 - 32481502-32483085                                         28   7.1  

>04_04_0783 - 28040828-28041615,28041942-28043589
          Length = 811

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 265 VLYSFAVYVAGPVLAFLIAAKAAETPHTTVRTAA 366
           + YS+A    GP+L  L+A +AA    TT  T A
Sbjct: 507 LFYSYATVAGGPLLMALVAGEAAHNFETTPPTDA 540


>08_01_0545 - 4740883-4740902,4741169-4741286
          Length = 45

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -1

Query: 380 APDIRAAVRTVVCGVSAAFAAIRNASTGP 294
           AP++ AAV   VC VSAA AA   AS  P
Sbjct: 7   APEMGAAVVAGVCVVSAAVAAAAAASPSP 35


>02_05_0345 -
           28142434-28142658,28143087-28143158,28143252-28143371,
           28143483-28143674,28144919-28145017,28145448-28145594,
           28146310-28146513
          Length = 352

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -1

Query: 248 RRYIFYSGLDGRSATWAGIADRFRAHLRCLNCDELL 141
           R Y   SG DGRSA  AG   R   H    +CDE L
Sbjct: 11  RVYSSVSG-DGRSANGAGSGKRVGTHNGSFHCDEAL 45


>02_05_0883 - 32481502-32483085
          Length = 527

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 121 SVPLCRLNSSSQFKHRKWALNLSAIPAQVAERPSRPE*NMYRRRKPTCVLYSFAVYVAGP 300
           SVP C   ++S   HR + + + A P+    +P +      RRR P  V  S+   +A P
Sbjct: 16  SVPTCPRGNASALSHRPYLMAVVAPPSLALPQPPQNPTPKPRRRPPRDVA-SWTSAIARP 74

Query: 301 VLAFLIAAKAA 333
                + A AA
Sbjct: 75  AKQGDLPAAAA 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,959
Number of Sequences: 37544
Number of extensions: 298414
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)