Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A03
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    64   1e-11
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   5.8  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   5.8  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 35/65 (53%), Positives = 41/65 (63%)
 Frame = +2

Query: 2   LLXLSAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLIA 181
           LL L A FKQATVG  +    PGLL LKGK K++AW +L G SKEDA   YI  V+ L  
Sbjct: 24  LLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKEDAASEYISFVDELKT 82

Query: 182 SIGLK 196
             G+K
Sbjct: 83  KYGMK 87


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 326 HFCLKCFFFKNTNSY 370
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 135 SFEVPASLCQASNLALPFKARRP 67
           S+ +PA + Q  N  +P KA +P
Sbjct: 30  SYSLPAPVAQKKNAQIPLKASKP 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,312
Number of Sequences: 5004
Number of extensions: 38525
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)