Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A03
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    50   2e-06
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    48   7e-06
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    46   2e-05
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    45   5e-05
05_06_0152 - 26008495-26009074,26010555-26011361,26016536-260166...    27   7.8  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = +2

Query: 5   LXLSAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLI 178
           L L   +KQATVG  + A  PG+ A + +AK+DAW  + G SKE+A   YI  V+ L+
Sbjct: 27  LILYGLYKQATVGDVNTAR-PGIFAQRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 25/57 (43%), Positives = 35/57 (61%)
 Frame = +2

Query: 5   LXLSAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 175
           L L   +KQATVG  + +  PG+ A + +AK+DAW  + G SKE+A   YI  V+ L
Sbjct: 27  LILYGLYKQATVGDVNTSR-PGIFAQRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%)
 Frame = +2

Query: 5   LXLSAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLI 178
           L L   +KQATVG       PG+  LK + K+DAW  + G SKE+A   YI  V+ L+
Sbjct: 27  LLLYGLYKQATVGPVTTGR-PGIFNLKDRYKWDAWKAVEGKSKEEAMADYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 24/57 (42%), Positives = 32/57 (56%)
 Frame = +2

Query: 5   LXLSAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 175
           L L   +K AT G    A  P  L LK +AK++AWHKL     E+A + YI +V+ L
Sbjct: 117 LQLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITVVDEL 172


>05_06_0152 -
           26008495-26009074,26010555-26011361,26016536-26016657,
           26016860-26017462
          Length = 703

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 11  LSAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQ 145
           ++AH + A    AD  +S    A +GK K++A H  A   +ED +
Sbjct: 488 VTAHKEGAATAWADGGSSRSAFARRGKRKWEAPHCGAIARREDGE 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,827
Number of Sequences: 37544
Number of extensions: 222995
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)