Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A03
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 314 WRQKSLM-RDDDAKNRAYLYSTLDNENYH 231
           W QK L+ RD   KN   +Y  LDN + H
Sbjct: 255 WHQKELVRRDSRRKNYGGVYH-LDNHHVH 282


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 102 TLGTNWPALRRRMPRKPTSRSSKVS*LPSASKNKRLNFQ 218
           +L   + ALR+ +P  P+ + SK+  L  A++     FQ
Sbjct: 268 SLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQ 306


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 526 QNKYKTERPSTCILLKHDFEKD 461
           + K+ T+R ++C LLK   E D
Sbjct: 1   KEKHLTQRINSCDLLKKRSEND 22


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 287 DDAKNRAYLYSTLDNENYHVLAS 219
           DD ++  +LY+   +E Y VL S
Sbjct: 248 DDYESLVHLYTRDQSETYDVLRS 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,723
Number of Sequences: 438
Number of extensions: 2504
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)