Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P24
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    57   9e-10
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    57   9e-10
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    52   2e-08
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.4  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    24   5.8  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   5.8  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    24   7.6  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    24   7.6  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 56.8 bits (131), Expect = 9e-10
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = -1

Query: 239 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDL 90
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAK L
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 56.8 bits (131), Expect = 9e-10
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = -1

Query: 239 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDL 90
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAK L
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50



 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 72  RDLITDIGSGVGAAP 28
           ++L+ +IGSG GAAP
Sbjct: 56  KELLLNIGSGAGAAP 70


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 52.4 bits (120), Expect = 2e-08
 Identities = 23/50 (46%), Positives = 35/50 (70%)
 Frame = -1

Query: 239 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDL 90
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAK L
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKAL 50


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 275 GLRQLARSKLKMVSKAELACVYSAL 201
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 334 RPADALCCQNSNVLVLS*AKAYGNLHVQN 248
           +P D   C  +N +V++ AKA G + + N
Sbjct: 179 KPLDNFKCIENNNVVINSAKAMGGISITN 207


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 20  QSAGAAPTPEPMSVIRSRHIDAFQGLWRTDLANMALHL 133
           QSA  AP+P+   +IR + +  F+ +   ++A  +L L
Sbjct: 219 QSATQAPSPQQAEIIRPKILKYFEKVLGENIAAESLML 256


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 125 LHLQPPLSRWWKFS 166
           LH+Q  L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 103 SPKTLEGINVP*PDHRHRLWSGCCSGRLVERQ 8
           S  T + +NV     +H  W+G    +  ERQ
Sbjct: 26  SKPTKDSVNVALKRRKHNSWNGSLDSKANERQ 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,715
Number of Sequences: 5004
Number of extensions: 29751
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)