Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_P24
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 66 9e-12
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 0.74
11_01_0340 + 2534998-2535660 28 1.7
08_02_0245 + 14731718-14731951,14733756-14734847 28 1.7
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 1.7
10_02_0030 + 4350970-4351165,4351502-4351723,4351889-4352502 28 2.3
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 28 2.3
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 3.9
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24... 27 5.2
08_01_0992 + 10045182-10045917,10046225-10046685 26 6.9
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 26 6.9
09_04_0013 - 13726386-13726848,13726932-13727140,13727223-137273... 26 9.1
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 26 9.1
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898... 26 9.1
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 26 9.1
05_04_0215 - 19117335-19117390,19118051-19118426,19118861-191189... 26 9.1
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 65.7 bits (153), Expect = 9e-12
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = -1
Query: 239 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 96
+S +E+AC +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK
Sbjct: 1 MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAK 48
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 0.74
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -1
Query: 275 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 153
G+R+LA+ V+K + S +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289
>11_01_0340 + 2534998-2535660
Length = 220
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 46 RADVGDQVTAH*CLPRSLANRPGQYGSTSTAAAFKMVEIFSPVTATSSS 192
RAD D+ H S ++ GS S AAA + E SP +++SSS
Sbjct: 45 RADAADRWDTHKKPTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSS 93
>08_02_0245 + 14731718-14731951,14733756-14734847
Length = 441
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 105 VRQRPWKASMCRDLITDIGSGVGAAPA 25
+RQ WK ++ +LI+DIG+G G + A
Sbjct: 280 LRQGRWKDAIKSELISDIGTGQGGSNA 306
>06_03_0191 -
17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 108 SVRQRPWKASMCRDLITDIGSGVGAAPAD 22
S RQ+P A +C DL++++ S + AP +
Sbjct: 30 SARQKPPDALLCFDLLSELSSALDEAPKE 58
>10_02_0030 + 4350970-4351165,4351502-4351723,4351889-4352502
Length = 343
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 174 NW*ENFHHLESGGCRCRAILARSVRQRPWKASMCRDLITDIGSGVGAAPA 25
NW + F + GG + ++ +PWK + R ++ D G+ GA A
Sbjct: 244 NWNDLFWAVHPGGRAILDNIEGKLQLQPWKLAASRQVLHDYGNMSGATIA 293
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 27.9 bits (59), Expect = 2.3
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 1 AAAGAPPVGRSSTHSRADVGDQVTAH*CLPRSLANRP----GQYGSTSTAAAFKMVEIFS 168
AAA A ++T + D TAH L RS+ R G +G ++ S
Sbjct: 475 AAAAAASAASAATVQVRILLDDGTAH-VLQRSIDGRSEPVIGLHGGALLGVTYRTSRRIS 533
Query: 169 PVTATSSST 195
PVTAT+ ST
Sbjct: 534 PVTATAIST 542
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 167 HQLRQHHHPPG*EQSKH 217
HQ R+HHHPP + H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578
>06_01_0025 -
244068-244177,244279-244333,244500-244527,244621-244691,
244829-244926,245069-245186,245573-245636,245744-245808,
245893-245928,246255-246311,246422-246691
Length = 323
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 80 DAFQGLWRTDLANMALHLQPPLSRWWKFSHQLRQH 184
+ + +W+TD H + L W F H+LRQH
Sbjct: 229 EVWANVWQTDCIARVSH-EDGLVVGWIFLHELRQH 262
>08_01_0992 + 10045182-10045917,10046225-10046685
Length = 398
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 93 PWKASMCRDLITDIGSGVGAAPADWWSASR 4
P A+ D + ++G A PA WW + R
Sbjct: 195 PAHAAAAMDTVMEVGLIRHAVPASWWKSMR 224
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 26.2 bits (55), Expect = 6.9
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -1
Query: 266 QLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDLG 87
Q A LK K +AC L+LV DD T T+ KA A D+ G + LG
Sbjct: 657 QAADHALKRQVKHSVACGVDWLVLVSDDSDFT----DTVRKARAADLRTVVVGDGCRALG 712
>09_04_0013 -
13726386-13726848,13726932-13727140,13727223-13727323,
13727515-13727740
Length = 332
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 8 LALHQSAGAAPTPEPMSVIRSRHIDAF 88
LALH AG A P P+ ++R AF
Sbjct: 19 LALHGGAGDATPPPPLRLVRGARRVAF 45
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 119 MALHLQPPLSRWWKFSHQLRQHHHPP 196
+ LH +P L W +F +QH P
Sbjct: 4466 LVLHFEPYLMNWSEFDQLQKQHEENP 4491
>07_03_1604 -
28089032-28089079,28089161-28089371,28089484-28089853,
28090034-28090199
Length = 264
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 217 VFTLLSSWWMMMLP 176
+F+++SSWWM LP
Sbjct: 30 LFSIISSWWMNPLP 43
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 18 TSRPEQHPLQSRCR*SGHGTLMPSKVFGEQTWPIWLYIYSR 140
T PE L+ R S GTL+ + V T WL +Y R
Sbjct: 537 TLSPEYRMLEGRVAASKIGTLLGAHVEQWNTAECWLQLYER 577
>05_04_0215 -
19117335-19117390,19118051-19118426,19118861-19118919,
19120455-19120712,19120853-19121059,19121201-19121351
Length = 368
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 51 RCR*SGHGTLMPSKVFGEQTWPIWLYIYSRRFQDGGNFLTSYGN 182
+C SG + + E+ IW ++Y R+ + GG + GN
Sbjct: 132 KCVNSGACDYLVKPLRHEELKNIWQHVYRRKLRSGGRRAAAAGN 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,420,118
Number of Sequences: 37544
Number of extensions: 255631
Number of successful extensions: 727
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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