Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P20
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   3.7  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    25   4.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   6.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   6.4  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 11  KKKTLYHSSSGLSSARQQKKSVAHYXF 91
           ++ TLY SS GLS    Q ++++ Y +
Sbjct: 69  QEPTLYESSRGLSCPGYQARNISEYSY 95


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 201 SMRSMQPENMQSTQSTPGVRCTQQRPERYMQQLQGTCSSPAEAWLTRKPGE 353
           SM + Q  NM  +++   V C     + ++  +    S+ AE W+  KPGE
Sbjct: 240 SMNTQQIYNM--SRAFNHVWCILNNKKVFLYDVHPLHSTSAEDWIHMKPGE 288


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 116 FYLFDSNTKKXNARLIFFAAWRLKVL 39
           F+LFD      +  LIF + W++K L
Sbjct: 752 FHLFDDKEHACSLTLIFKSIWKVKKL 777


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 340 ESQESNEDQVFEHFDCLFSSSESDSI 417
           + +E  EDQ FE    LFS S S+ I
Sbjct: 98  DGRERGEDQDFERKSALFSISTSEVI 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,727
Number of Sequences: 5004
Number of extensions: 19437
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)