Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P18
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    35   0.010
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   2.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   4.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   6.0  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   6.0  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.0  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   7.9  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   7.9  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
 Frame = -1

Query: 467  LFYMLWSPICLVLSIPDSTKVSDHNSQWK*NL-FVNSILYSEV*CRYGVFVILLYVCFLC 291
            +F   WS +  +L  P+ TK   +  Q+K NL F +S+   +  C   V+ +LL  C L 
Sbjct: 1252 IFMFTWSLVNKMLICPEFTKQKKYYEQYKENLGFFDSLCIGDNECITRVYFLLLKACGL- 1310

Query: 290  NLTNSMCFLCAFEL*SVLPIC----LFLLQ 213
             + N + F  +  L  V+ +     LFLLQ
Sbjct: 1311 -IMNGLNFEASVMLEEVISLTEKLELFLLQ 1339


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = +1

Query: 100 WDLKLTSKSINEPNH-----RWPFWRKI 168
           WDL     SI +PNH     +WP W+K+
Sbjct: 63  WDLTKALMSI-DPNHPAHPHKWPLWKKL 89


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 271  HMLFVRLHR-KHTYNKITNTPYLHHTSEYKIEFT 369
            HM+    HR K+T +K+T+T   ++ S+Y++  T
Sbjct: 992  HMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILT 1025


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 280  FVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRFHFHWELWSDTLVESGIL 429
            F  + + H+ NKI  T   +H S   ++     + + +LW+D    + +L
Sbjct: 992  FEAIWKGHSENKIPYTSLSNHLSTEIVKLDHDIYNYEKLWADVGFRNAVL 1041


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 199 FLCEICNRNKQMGRTDYNSN-AHKKHMLFVR---LHRKHTYNKITN-TPYLHHTSEYKIE 363
           F CEIC     MGR  ++ +   ++H+  ++   +     +N+IT+    L    +YK++
Sbjct: 397 FPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPLFNQITSIDEALQLWQKYKVD 456

Query: 364 FTKR 375
             KR
Sbjct: 457 SKKR 460


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 299  FLCNLTNSMCFLCAFEL*SVLPICLFLLQISHKKKTVFS 183
            FL N+TN  C     +   +LP+C FL  + +   TVFS
Sbjct: 1097 FLENITN-WCSESGIKSLELLPVCCFLRFMYYFLPTVFS 1134


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 259 AHKKHMLFV-RLHRK-HTYNKITNTPYLHHTSEYKIEFTKRFHFHWELWSDTLVESG 423
           A KK  L +  LH   +T  ++T+       SE+K   T+    HW+     L++SG
Sbjct: 238 ASKKETLHIFSLHGSPNTIRQLTSEEPYEEASEFKSSTTEPRQTHWKRKLLKLIDSG 294


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 358 IEFTKRFHFHWELWSDTLVESGILNTK 438
           I+F   F FH+   S TL+  G++ +K
Sbjct: 381 IDFGTAFVFHYPFESTTLMSDGVVGSK 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,587
Number of Sequences: 5004
Number of extensions: 57581
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)