Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P18
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA...    29   1.8  
AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z82288-4|CAB05321.1|  295|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    28   5.4  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    28   5.4  
Z82286-6|CAB05304.1|  376|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z71181-7|CAA94900.2|  485|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF240777-1|AAF63745.1|  376|Caenorhabditis elegans delta 12 fatt...    27   9.5  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    27   9.5  

>D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA
           thiolase protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 256 NAHKKHMLFVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRF 378
           NA K+HM      R+H Y KI    +LH     K +FTK F
Sbjct: 161 NAAKEHMEKYGSKREH-YAKIAYKNHLHSVHNPKSQFTKEF 200


>AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical
           protein Y57A10C.6 protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 256 NAHKKHMLFVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRF 378
           NA K+HM      R+H Y KI    +LH     K +FTK F
Sbjct: 161 NAAKEHMEKYGSKREH-YAKIAYKNHLHSVHNPKSQFTKEF 200


>Z82288-4|CAB05321.1|  295|Caenorhabditis elegans Hypothetical
           protein ZK896.6 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 286 SQIACAFYVHLNYNQFCPFVCFYYKSHTKKKL 191
           +Q++ A +V +  +   PF+C+Y K H + +L
Sbjct: 124 AQLSNAKWVTVRSSLMLPFICYYQKGHNRNQL 155


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 364 TLFCIQRYDVDMVYLLFYCMCVSCAISQIACAFYVHLNYNQF 239
           T+FC   Y + + YL +YC+     IS I   +     Y+ F
Sbjct: 599 TIFCAIFYIIFIAYLTYYCLVAMEFISPIQTKWLAEPIYHDF 640


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 195  NCIQSLLDIYFSPEWPSVIGLIN*FGS 115
            N +Q LL   +SPEWP+   ++   GS
Sbjct: 1080 NFLQELLSALYSPEWPAAEMILTALGS 1106


>Z82286-6|CAB05304.1|  376|Caenorhabditis elegans Hypothetical
           protein W02A2.1 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 301 VSCAISQIACAF-----YVHLNYNQFCPFVCFYYKSHTKKKLYSVLIRYL 167
           V CA+S +ACA      +V  +Y+ +  FV +YY     + L  V+I YL
Sbjct: 203 VKCAVSGVACAICAYIAFVLCDYSVY-TFVKYYYIPLLFQGLILVIITYL 251


>Z71181-7|CAA94900.2|  485|Caenorhabditis elegans Hypothetical
           protein K07C5.7 protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/80 (25%), Positives = 39/80 (48%)
 Frame = +1

Query: 256 NAHKKHMLFVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRFHFHWELWSDTLVESGILNT 435
           +AH  HM+ +R   +HT  KI     L   +++ + +   + F  E +  TL+++   N 
Sbjct: 79  SAHTGHMMHIREMFEHTGYKIVTKNELSLDTKWDVMWHHEYSFTQEPFK-TLIKNASPN- 136

Query: 436 KQIGDHSI*NNIYVHRCKMA 495
            QI +H   +  Y  + ++A
Sbjct: 137 -QIVNHVPGSGFYTSKVQLA 155


>AF240777-1|AAF63745.1|  376|Caenorhabditis elegans delta 12 fatty
           acid desaturaseFAT-2 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 301 VSCAISQIACAF-----YVHLNYNQFCPFVCFYYKSHTKKKLYSVLIRYL 167
           V CA+S +ACA      +V  +Y+ +  FV +YY     + L  V+I YL
Sbjct: 203 VKCAVSGVACAICAYIAFVLCDYSVY-TFVKYYYIPLLFQGLILVIITYL 251


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
            protein K09F6.3 protein.
          Length = 1360

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 564  VGXDSGIGSDRRCGCVLTWESYFRHFTPVNVDIVLYAVVTYLF 436
            V   +GIG   R    ++WE  + HF PVN +I  ++V  +++
Sbjct: 1165 VHCSNGIG---RSAAFVSWELCY-HFVPVNFEICDFSVAEFVY 1203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,143
Number of Sequences: 27780
Number of extensions: 325806
Number of successful extensions: 738
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)