Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P18
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 329 GVFVILLYVCFLCNLTNSMC 270
           GVF+I     F CN+ +++C
Sbjct: 626 GVFLICWLPFFTCNIMDAIC 645


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 483 PVNVDIVLYAVVTYLFSIKY 424
           P +V I++Y ++TY+  + Y
Sbjct: 318 PEDVLIIIYTILTYMSGVFY 337


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 180 LLDIYFSPEWPSVIGL 133
           LLD +F P+W  V+ L
Sbjct: 645 LLDKFFFPKWLQVLAL 660


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 329 GVFVILLYVCFLCNLTNSMCFLC 261
           GVF+I     F  N+  S C  C
Sbjct: 279 GVFLICWVPFFCVNIVTSYCKTC 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,803
Number of Sequences: 438
Number of extensions: 3718
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)