Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P16
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   186   2e-48
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   185   5e-48
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.9  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   5.1  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.8  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  186 bits (453), Expect = 2e-48
 Identities = 86/148 (58%), Positives = 105/148 (70%)
 Frame = -2

Query: 569 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 390
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 389 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 210
           RRFNGGVGR AQ K+FG TQ RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 209 RAPCLRRRTYRAHGRINPYMSXPCHIEV 126
            AP  RRRTYRAHGR+  Y+S P HIE+
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEI 148


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  185 bits (450), Expect = 5e-48
 Identities = 86/148 (58%), Positives = 104/148 (70%)
 Frame = -2

Query: 569 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 390
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 389 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 210
           RRFNGGVGR AQ K+FG TQ RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 209 RAPCLRRRTYRAHGRINPYMSXPCHIEV 126
            AP  RRRTYRAHGR+  Y+S P HIE+
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEI 148


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 509 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 396
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 332 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 415
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 502 VFTLRTHMRPQWQSGRCRSVVL 437
           V+  R  +   W+ GRCR VVL
Sbjct: 248 VYAERCRVECNWRHGRCRQVVL 269


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 512 SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 405
           +N ++  K+  ETA A+RKM  +  +R L+ + ++K
Sbjct: 73  TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,036
Number of Sequences: 5004
Number of extensions: 42723
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)