Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P16
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   231   4e-61
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   122   2e-28
AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical...    29   2.7  
AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related ...    29   3.5  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  231 bits (564), Expect = 4e-61
 Identities = 107/145 (73%), Positives = 121/145 (83%)
 Frame = -2

Query: 560 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 381
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 380 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 201
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 200 CLRRRTYRAHGRINPYMSXPCHIEV 126
            LRRRTYRAHGRINPYMS PCHIEV
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEV 150


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  122 bits (295), Expect = 2e-28
 Identities = 75/145 (51%), Positives = 86/145 (59%)
 Frame = -2

Query: 560 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 381
           YSR P+N  KSCKARGS+LRVHFKNT+E A     M LR               +P RR 
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46

Query: 380 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 201
              +    + K+    +           L LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 47  QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97

Query: 200 CLRRRTYRAHGRINPYMSXPCHIEV 126
            LRRRTYRAHGRINPYMS PCHIEV
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEV 122


>AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical
           protein Y39B6A.48 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
 Frame = +3

Query: 297 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTERHLPDC 467
           E FG   G       ++ C S  + +   + ++  T +++  VF     +  +ER +P  
Sbjct: 30  ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89

Query: 468 HCGLICVLKVNTEV*TTRFA*FRRVIR-LPRVTTHNYFSQEKISSAGRIHLN 620
            CG +CV  +  +V    F  F+ +   L RV  H  F+Q  + +  R H N
Sbjct: 90  MCGSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRHG-FNQSALRT-HRFHQN 139


>AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related
           protein HOT-2 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 387 TEWN---TLFLFNHVF--EVTNSTTERHLPDCHCGLICVLKVNTEV*TTRFA*FRRVIR- 548
           T W    T +++  VF     +  +ER +P   CG +CV  +  +V    F  F+ +   
Sbjct: 21  TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 80

Query: 549 LPRVTTHNYFSQEKISSAGRIHLN 620
           L RV  H  F+Q  + +  R H N
Sbjct: 81  LDRVLRHG-FNQSALRT-HRFHQN 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,818,673
Number of Sequences: 27780
Number of extensions: 255758
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)