Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P15
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    26   4.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   8.2  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   8.2  

>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 421 YTQSLKLSLKTTCI*KNVFD--KICDMCPFRNCIFIYIYRGLQ*P 293
           Y  SL+ + K + I +NV    +    CP  NC F++   G++ P
Sbjct: 485 YLSSLQRTRKLSVIIENVISGSRFRCFCPKENCYFMFACAGIRTP 529


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 423 STPKASN*ASKLHVYEKTYLTKYVTCALFVIAYSFTFIV 307
           +T +A+    +  V  K Y T +  C+LF+I   F FI+
Sbjct: 873 ATGQAAEKMERGKVKWKVYWTYFKACSLFLIFLYFLFII 911


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 354 VTCALFVIAYSFTFI 310
           VTCAL +++Y F F+
Sbjct: 237 VTCALIILSYGFNFL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,285
Number of Sequences: 5004
Number of extensions: 55360
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)