Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P15
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   7.7  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   7.7  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   7.7  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 413 LGVDPFYNNFSIFQLLINAKIYLKS 487
           +G DPFY+ F  F+++  A +YL +
Sbjct: 811 MGTDPFYDRFPWFRMVGRAFVYLNN 835


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 413 LGVDPFYNNFSIFQLLINAKIYLKS 487
           +G DPFY+ F  F+++  A +YL +
Sbjct: 858 MGTDPFYDRFPWFRMVGRAFVYLNN 882


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 413 LGVDPFYNNFSIFQLLINAKIYLKS 487
           +G DPFY+ F  F+++  A +YL +
Sbjct: 811 MGTDPFYDRFPWFRMVGRAFVYLNN 835


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,559,931
Number of Sequences: 27780
Number of extensions: 318940
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)