Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P13
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   215   7e-57
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   173   2e-44
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   2.0  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.0  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    27   2.7  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.2  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.2  

>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  215 bits (524), Expect = 7e-57
 Identities = 102/171 (59%), Positives = 138/171 (80%), Gaps = 1/171 (0%)
 Frame = -3

Query: 718 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 539
           +L RP    LP+IY  LG+DYDERVLPSI +E+LK+VVAQFDA ELITQRE+VS K+   
Sbjct: 93  VLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVSAKIRQE 152

Query: 538 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIA 359
           L +RA +FG+ L+D+SITH+TFGKEFT+AVE KQ+AQQEAE+ARFLVE++EQ+++A VI 
Sbjct: 153 LVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQSEQERQANVIR 212

Query: 358 AEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLA-KSRNVTYLPHG 209
           AEG+A+AA +++K+   AG  L+++RR+E ++++A  LA K   VTYLP G
Sbjct: 213 AEGEAEAADIVSKALDKAGGALIQIRRLETSKEVATALANKGAQVTYLPFG 263


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  173 bits (422), Expect = 2e-44
 Identities = 85/167 (50%), Positives = 123/167 (73%)
 Frame = -3

Query: 718 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 539
           +L RP    LP+IY  LG DYDERVLPSI +EVLK+VVAQF+A +LITQRE VS+ V ++
Sbjct: 103 VLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVSRLVREN 162

Query: 538 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIA 359
           L +RAA+F ++LDD+S+TH+ F  EFT AVE KQ+AQQ+A++A F V++A  +K+  ++ 
Sbjct: 163 LMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEKQGFIVR 222

Query: 358 AEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYL 218
           A+G+ +AA L+ ++  +   G +ELR++E A +IA  L+KS N   L
Sbjct: 223 AQGEGRAAQLIGEAIKNK-PGFIELRKLETAREIANILSKSNNKVML 268


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 400 VEKAEQQKKAAVIAAEGDAQAAVLLA 323
           +E+ E+QK AA  AAE +AQ A   A
Sbjct: 213 IEREEEQKAAAAAAAEEEAQLAAQTA 238


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -3

Query: 391 AEQQKKAAVIAAEGDAQAAVLLAK 320
           AE+QK+A ++ +EG  QAA+ +A+
Sbjct: 211 AERQKRAEILESEGKRQAAINVAE 234


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 400 VEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAG-EGLVELRRIEAAED 260
           +  +E+  + A I+A GD     LLAK+    G EG++ ++      D
Sbjct: 169 ITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISD 216


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 403 LVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAA 266
           L+ + ++ + A+V   + D    +     FG  G G+ +LRRI  A
Sbjct: 532 LLSRTDEVESASVAQIDMDINRTMAKNVFFGGKGPGIPKLRRILVA 577


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = -3

Query: 682 IYTILGIDYDERVLPSITSEVLKAVVAQ----FD---AGELITQREIVSQKVNDSLTER 527
           IYT+  I   ER+   I  + L A+++Q    FD   AGE+ T+    +  + D L E+
Sbjct: 159 IYTVTFIIAGERIARRIRQDYLHAILSQNIGYFDRLGAGEITTRITTDTNFIQDGLGEK 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,240
Number of Sequences: 5004
Number of extensions: 41509
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)