Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P12
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    63   1e-11
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.39 
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    26   1.6  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   4.9  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    24   6.4  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   6.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   6.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   8.5  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 63.3 bits (147), Expect = 1e-11
 Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = -3

Query: 312 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSXXXXXX 139
           MVN+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+      
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 138 XXXXXXKIVLRLEC 97
                 K+VLRLEC
Sbjct: 61  KAKVTKKVVLRLEC 74



 Score = 50.4 bits (115), Expect = 9e-08
 Identities = 23/50 (46%), Positives = 31/50 (62%)
 Frame = -1

Query: 152 PXSKRRQKPLRKLCSGLSVLIXKVRXQVALKRCKHFELGGDKKRKGQMIQ 3
           P   ++ K  +K+   L  +  K + Q+ LKRCKHFELGG+KK KG  IQ
Sbjct: 56  PVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQ 105


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 203 PWAACLSLDFLYCDTLCTLWHL 268
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 122 LVVFAFFLKXGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 301
           L+VF FF+  G         LR  R+L      S+ F +   L TL+H   + + + C G
Sbjct: 40  LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92

Query: 302 TFTIFE 319
            F +F+
Sbjct: 93  FFNLFK 98


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 239 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 153
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/51 (25%), Positives = 19/51 (37%)
 Frame = +3

Query: 126  WFLPSF*XWVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFC 278
            W L     W WT   + ++Y +  +    R F          VLCG  + C
Sbjct: 1224 WALSCLTFWFWTGVYSQSLYTYEFYKSASRIFR---TPNFWAVLCGTIVSC 1271


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -1

Query: 275 KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPXSKRRQKPLRKLCSGLSV 96
           K  +A K  R H+  +     +  V        ++ V SPNP S +R+K  R+  S  S 
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSSS 299

Query: 95  LIXKVRXQVA 66
           +      +VA
Sbjct: 300 ITTPPTAKVA 309


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 227 PRKGTLPRVEDVMIVNSRVTVVSPNPXS-KRRQKPLRKLCSGL 102
           P+K + P+V  +M      +VV+P+P S     + +RK+  G+
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTSLLDPARAVRKVIDGI 662


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 230 SPRKGTLPRVEDVMIVNSRVTVVSPNP 150
           SP +G+LPR     ++ + +++   NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,750
Number of Sequences: 5004
Number of extensions: 21846
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)