Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P12
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    69   1e-12
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    69   1e-12
Z83125-4|CAB05616.1|  376|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z74032-4|CAA98463.2|  404|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   5.4  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   5.4  
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z74029-3|CAE17749.1|  113|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 37/75 (49%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = -3

Query: 312 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQQGYGGQSXXXXXXX 136
           MVNVPK RRT+             +QYKK KE   AQGRRRYDRKQ G+GGQ+       
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 135 XXXXXKIVLRLECAD 91
                KIVLR+EC +
Sbjct: 61  AKTTKKIVLRMECTE 75



 Score = 49.6 bits (113), Expect = 7e-07
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = -1

Query: 152 PXSKRRQKPLRKLCSGLSVLIXKVRXQVALKRCKHFELGGDKKRKGQMIQ 3
           P  +++ K  +K+   +     K + Q+ +KRCKHFELGG KK +GQ+IQ
Sbjct: 55  PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQ 104


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 37/75 (49%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = -3

Query: 312 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQQGYGGQSXXXXXXX 136
           MVNVPK RRT+             +QYKK KE   AQGRRRYDRKQ G+GGQ+       
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 135 XXXXXKIVLRLECAD 91
                KIVLR+EC +
Sbjct: 61  AKTTKKIVLRMECTE 75



 Score = 49.6 bits (113), Expect = 7e-07
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = -1

Query: 152 PXSKRRQKPLRKLCSGLSVLIXKVRXQVALKRCKHFELGGDKKRKGQMIQ 3
           P  +++ K  +K+   +     K + Q+ +KRCKHFELGG KK +GQ+IQ
Sbjct: 55  PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQ 104


>Z83125-4|CAB05616.1|  376|Caenorhabditis elegans Hypothetical
           protein T15D6.5 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -1

Query: 302 YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPXSKRRQKPL 123
           Y  +AGRT    +  + +     KS R   LP++++       + +V+  P S  R+K L
Sbjct: 86  YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145

Query: 122 RK 117
           RK
Sbjct: 146 RK 147


>AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical
           protein D1079.1 protein.
          Length = 113

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 210 QRAFPW-TFCTVIPCVLCGIYIFC--STSCAVLVRSPFLSSFGTISTNV 347
           QR++P+ TF   +  +LC +YI C    S +V  +  FL +F  + +NV
Sbjct: 30  QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF-VMDSNV 77


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 162 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 302
           +H    V+  NV+ P Q   P     V+  VLC I   C  S  + +
Sbjct: 38  NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 248 RYHSTKSPRKGTLPRV-EDVMIVNSR 174
           +Y +TKS R+G LP + ED++    R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637


>Z74032-4|CAA98463.2|  404|Caenorhabditis elegans Hypothetical
           protein F35B12.5 protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = -1

Query: 299 QNSAGRTAKNVNATKYTRYHSTKSP--RKGTLPRVEDVMIVNSRVTVVSPNPXSKRRQKP 126
           Q    R  + +NA    +     S   +K T+P+ + +  V         +P   R+QKP
Sbjct: 149 QEETARRQEELNAQNLVKMQELMSNFFQKITIPKQQAIEPVEKDKENFHESPRQSRQQKP 208

Query: 125 LRKLCSGLSVL 93
             K+ S   V+
Sbjct: 209 ASKIASAREVI 219


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 224 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 319
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 224 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 319
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 243 IPCVLCGIYIFCSTSCAVLVRSPFLSSFGTI 335
           IPC++ GIYI  +    ++ +S   SS  TI
Sbjct: 233 IPCIIFGIYIALTIKIMIMKQSSLKSSEITI 263


>Z74029-3|CAE17749.1|  113|Caenorhabditis elegans Hypothetical
           protein C45B11.5 protein.
          Length = 113

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 231 FCTVIPCVLCGIYIFCSTSCAVLVR 305
           FC V+  +  GI++ C   C   +R
Sbjct: 25  FCLVVTFITIGIFLLCGAWCIYAIR 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,400,774
Number of Sequences: 27780
Number of extensions: 131266
Number of successful extensions: 412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)