Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P11
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    55   6e-09
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    31   0.088
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    28   0.82 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   1.4  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   1.9  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   1.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   1.9  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   3.3  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    26   4.4  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   4.4  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   5.8  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   7.7  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   7.7  

>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 55.2 bits (127), Expect = 6e-09
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
 Frame = -1

Query: 456 LRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQ-LV 280
           LR  VT L+K E I+    +  EA+++AE+LI+ A +  +       +A   + EK+  +
Sbjct: 21  LRNLVTSLVKHESIQTTWAKAKEAQRFAEKLITMA-KRANPQNNRKGLAEGMVFEKETTL 79

Query: 279 HKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNP 148
            K+F VLVPR+      YT+++K P  ++T++    VLE    P
Sbjct: 80  KKVFDVLVPRYNGRRCGYTRLLKLP-PRSTDNAPMGVLEFVDGP 122


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 31.5 bits (68), Expect = 0.088
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
 Frame = -1

Query: 537  VSKLRMNIKPEHRRLKNLKGP----EGRIDKLRKTVTGLIKFERIELNINRGDEARQYAE 370
            + KL   +  E+R LK  KGP     G++DK  K        E +   I+R +++ +Y +
Sbjct: 1130 IEKLGDVLTDEYRHLKEFKGPYLASNGKVDKHGKAEA----IEWLSKYIDRLNQSLEYDD 1185

Query: 369  RLIS--EAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVLVPRFE 244
            + I+  + +    C K  +++++     K +V KL  +L+P FE
Sbjct: 1186 KNITLKDKLLLLQCLKMLLEVSD----RKLIVEKLRPILLPSFE 1225


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 11  LHWVSLPIFAAISEIFDCL*SYFAASSNTF*IHNLLFGCLTIK-SGYGL 154
           L  V +P+ + +S+      ++F +S     +H L+ GC+T+K  GYGL
Sbjct: 381 LRHVYVPLNSFMSKSLSTFFTFFVSSV----LHELVMGCITLKIRGYGL 425


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 411 LNINRGDEARQYAERLISEAIRH 343
           LNIN  +E   YAER + E I+H
Sbjct: 513 LNINVPNEEGDYAERAVPEQIKH 535


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -1

Query: 552 EVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYA 373
           EV  L+SKL + IKP+ + L+     +  + K       L+  E I L++     A+QY 
Sbjct: 295 EVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALM--EMIVLHLPSPKTAQQYR 352

Query: 372 ERLISEAIRHGDC 334
              + E     +C
Sbjct: 353 AETLYEGPMDDEC 365


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -1

Query: 552 EVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYA 373
           EV  L+SKL + IKP+ + L+     +  + K       L+  E I L++     A+QY 
Sbjct: 295 EVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALM--EMIVLHLPSPKTAQQYR 352

Query: 372 ERLISEAIRHGDC 334
              + E     +C
Sbjct: 353 AETLYEGPMDDEC 365


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 178 ICMFSILSFRCFNHFCIRNCRVFKSWN 258
           IC F+ +S    NH C  NCR F + N
Sbjct: 89  ICEFNAVSNSQANHPCCSNCRAFINSN 115


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -2

Query: 359 QKLSVMVTVTNQLWTWPIFGF----LKNSLF--INYSKFWFQDLKTRQFLIQK*LKHLKL 198
           Q L +M  +    W   IF F     ++ LF  + Y+ FW   L+T+    QK   H K+
Sbjct: 294 QMLYIMYNIVWISWNCGIFSFPRGITQSQLFELMQYTGFWLVQLRTKPLTSQKPDWHYKM 353


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 341 VTVTNQLWTWPIFGFLKNSLFINYSKFWFQDLKTRQF 231
           + +   L+ W +F FLKN+ +I +     Q L  + F
Sbjct: 437 ICIVTDLFGWSVFDFLKNNNYIPFPLKHIQMLSQQLF 473


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 181 CMFSILSFRCFNHFCIRNCRVFK 249
           C   IL+ RCFN   + +C + K
Sbjct: 88  CHAEILALRCFNRLLLEHCILIK 110


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 35/136 (25%), Positives = 62/136 (45%)
 Frame = -1

Query: 492 KNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDM 313
           +NLK P G+I K+ K +  L     +E +       RQ+   + S   R        +D+
Sbjct: 61  RNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSVRQHNLPITSLVSR-------AIDI 113

Query: 312 ANFWLLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLI 133
           + F   EK+L   L   L+   +  T+    +I +P+   TE+  K++ E + N +P  +
Sbjct: 114 SQFKKEEKEL---LSTQLIRFLDTDTI----LIYSPE---TEYEGKLLEEQKENWWP--L 161

Query: 132 VKQPNNRLWIQNVLLD 85
            +   N+L +Q   LD
Sbjct: 162 KETFENKLGVQLSYLD 177


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 531 KLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIE 412
           KLR NI+    R++N++    + + L +   GL++ E +E
Sbjct: 33  KLRSNIQKIEERIENVESSLAKTEILHEDNPGLLEAEGLE 72


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 510 PEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDE 388
           P+H R + L  PE   DK+   ++  I+  +  L IN  DE
Sbjct: 248 PDHGRSRRLSSPEILADKI--FLSSFIQLCKKNLRINMDDE 286


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 465 IDKLRKTVTGLIKFERIELN--INRGDEARQYAERLISEAIR 346
           +D  RK   GL+    I+LN  ++   EA  Y + +  + IR
Sbjct: 226 LDGFRKRTDGLVHISNIQLNGRLDHPSEAVSYGQPVFVKVIR 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,974
Number of Sequences: 5004
Number of extensions: 49623
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)