Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P11
         (564 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012306-1|AAH12306.1|  175|Homo sapiens mitochondrial ribosomal...   113   4e-25
AK026857-1|BAB15575.1|  175|Homo sapiens protein ( Homo sapiens ...   113   4e-25
AF164797-1|AAF80761.1|  175|Homo sapiens ribosomal protein L17 i...   113   4e-25
AF141338-1|AAG49441.1|  184|Homo sapiens LYST-interacting protei...   113   4e-25
CR457177-1|CAG33458.1|  175|Homo sapiens MRPL17 protein.              111   2e-24
BC031242-1|AAH31242.1|  446|Homo sapiens coiled-coil domain cont...    30   6.5  
AJ580807-1|CAE45342.1|  529|Homo sapiens mutated in bladder canc...    30   6.5  

>BC012306-1|AAH12306.1|  175|Homo sapiens mitochondrial ribosomal
           protein L17 protein.
          Length = 175

 Score =  113 bits (272), Expect = 4e-25
 Identities = 60/142 (42%), Positives = 88/142 (61%)
 Frame = -1

Query: 480 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 301
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79

Query: 300 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 121
           L EK L+ KLF+VL PR+++ T  YT+M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 80  LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138

Query: 120 NNRLWIQNVLLDAAKYDYRQSK 55
           ++ L + N LL   + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160


>AK026857-1|BAB15575.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23204 fis, clone ADSE00191. ).
          Length = 175

 Score =  113 bits (272), Expect = 4e-25
 Identities = 60/142 (42%), Positives = 88/142 (61%)
 Frame = -1

Query: 480 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 301
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79

Query: 300 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 121
           L EK L+ KLF+VL PR+++ T  YT+M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 80  LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138

Query: 120 NNRLWIQNVLLDAAKYDYRQSK 55
           ++ L + N LL   + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160


>AF164797-1|AAF80761.1|  175|Homo sapiens ribosomal protein L17
           isolog protein.
          Length = 175

 Score =  113 bits (272), Expect = 4e-25
 Identities = 60/142 (42%), Positives = 88/142 (61%)
 Frame = -1

Query: 480 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 301
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79

Query: 300 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 121
           L EK L+ KLF+VL PR+++ T  YT+M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 80  LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138

Query: 120 NNRLWIQNVLLDAAKYDYRQSK 55
           ++ L + N LL   + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160


>AF141338-1|AAG49441.1|  184|Homo sapiens LYST-interacting protein
           LIP2 protein.
          Length = 184

 Score =  113 bits (272), Expect = 4e-25
 Identities = 60/142 (42%), Positives = 88/142 (61%)
 Frame = -1

Query: 480 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 301
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 30  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 88

Query: 300 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 121
           L EK L+ KLF+VL PR+++ T  YT+M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 89  LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 147

Query: 120 NNRLWIQNVLLDAAKYDYRQSK 55
           ++ L + N LL   + D RQS+
Sbjct: 148 DSHLTLLNQLLQGLRQDLRQSQ 169


>CR457177-1|CAG33458.1|  175|Homo sapiens MRPL17 protein.
          Length = 175

 Score =  111 bits (267), Expect = 2e-24
 Identities = 59/142 (41%), Positives = 87/142 (61%)
 Frame = -1

Query: 480 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 301
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79

Query: 300 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 121
           L EK L+ KLF+VL PR+++ T  Y +M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 80  LTEKDLIPKLFQVLAPRYKDQTGGYARMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138

Query: 120 NNRLWIQNVLLDAAKYDYRQSK 55
           ++ L + N LL   + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160


>BC031242-1|AAH31242.1|  446|Homo sapiens coiled-coil domain
           containing 112 protein.
          Length = 446

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = -1

Query: 558 QAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINR-GDEAR 382
           +A++ + ++K+  N+K    +LK++K     ++KLR+ +      E IE  IN   +E R
Sbjct: 38  RAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMM------EEIENAINTFKEEQR 91

Query: 381 QYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVL 259
              E LI E     +         + W L      K F+ +
Sbjct: 92  LIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAI 132


>AJ580807-1|CAE45342.1|  529|Homo sapiens mutated in bladder cancer
           1 protein.
          Length = 529

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = -1

Query: 558 QAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINR-GDEAR 382
           +A++ + ++K+  N+K    +LK++K     ++KLR+ +      E IE  IN   +E R
Sbjct: 121 RAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMM------EEIENAINTFKEEQR 174

Query: 381 QYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVL 259
              E LI E     +         + W L      K F+ +
Sbjct: 175 LIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAI 215


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,583,847
Number of Sequences: 237096
Number of extensions: 1494328
Number of successful extensions: 2829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)