Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P09
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5GZD1 Cluster: AT-hook1 protein; n=1; Capsicum annuum|...    36   1.0  
UniRef50_Q6Z4V0 Cluster: Putative AP2/EREBP transcription factor...    35   2.4  

>UniRef50_A5GZD1 Cluster: AT-hook1 protein; n=1; Capsicum
           annuum|Rep: AT-hook1 protein - Capsicum annuum (Bell
           pepper)
          Length = 257

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 730 HHHHPSPNQPAVIINQPPPP 671
           HHHH  P+QP V ++ PPPP
Sbjct: 35  HHHHQLPSQPIVSMSAPPPP 54


>UniRef50_Q6Z4V0 Cluster: Putative AP2/EREBP transcription factor
           LEAFY PETIOLE; n=4; Oryza sativa|Rep: Putative AP2/EREBP
           transcription factor LEAFY PETIOLE - Oryza sativa subsp.
           japonica (Rice)
          Length = 175

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 733 IHHHHPSPNQPAVIINQPPPP 671
           +HHHHPSP Q A+    PPPP
Sbjct: 98  MHHHHPSPPQHALSPAVPPPP 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,489,407
Number of Sequences: 1657284
Number of extensions: 10569513
Number of successful extensions: 26617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26507
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)