Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P08
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    30   2.5  
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390           28   9.9  

>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 196 IVCSSCTVQLILLENLVVKKMGTKRLTCGFXGDFL 92
           +VCS C   + L  +  V   GT+RL CG   + L
Sbjct: 872 VVCSGCNRLVQLPTDFAVPSKGTRRLQCGSCSEIL 906


>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
          Length = 519

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 2   IVTSHNLLNQTSPLFLVFSNFFXKSTHTSSQ 94
           +V   N++  +S L LVFS FF  S   SSQ
Sbjct: 36  VVVRRNVVKSSSLLLLVFSTFFVFSVLRSSQ 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,900,245
Number of Sequences: 37544
Number of extensions: 248032
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)