Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_P07
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1257 - 28790660-28790785,28791126-28791283,28791528-287916... 103 1e-22
03_06_0660 - 35349264-35349375,35349914-35350017,35350211-353503... 102 3e-22
11_04_0167 + 14382976-14385244,14389373-14389842 29 3.7
11_01_0124 + 975921-976589,1010229-1011290 28 5.0
10_06_0094 - 10604597-10605028,10605673-10605738,10606249-10606371 28 6.5
11_06_0754 - 26935647-26937780,26940890-26941827 27 8.7
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 27 8.7
07_03_0314 + 16669072-16669553,16669936-16671106,16671394-166720... 27 8.7
>06_03_1257 -
28790660-28790785,28791126-28791283,28791528-28791604,
28791825-28791955
Length = 163
Score = 103 bits (247), Expect = 1e-22
Identities = 51/114 (44%), Positives = 75/114 (65%)
Frame = -3
Query: 392 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTL 213
LFEDIF V +DP+GKKFDRVSR+ SE F M + LD+ + +YPM+ G++F +VLA TL
Sbjct: 50 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 109
Query: 212 RENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSF 51
+G PD G + + AD F+YVM GK+Y+I D ++ + A+++ + F
Sbjct: 110 NLDGTPDTGFYTQAGRK-TLADKFDYVMHGKLYKISEDSSSGQ-ATKVYGFYEF 161
>03_06_0660 -
35349264-35349375,35349914-35350017,35350211-35350368,
35350899-35350986,35352927-35353025,35353377-35353472,
35353591-35353628,35357960-35358285,35358600-35358796
Length = 405
Score = 102 bits (244), Expect = 3e-22
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Frame = -3
Query: 404 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 225
MA LFEDIF V +DP+GKKFDRVSR+ S+ F M + LD+ + +YPM G++F +VL
Sbjct: 258 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 317
Query: 224 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGD-EAAMEPASRLAAYVSF 51
TL +G PD + + AD +EYVM GK+Y+I D + + + A ++ Y SF
Sbjct: 318 VPTLNLDGTPDSAFFTQAGRK-TLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASF 375
>11_04_0167 + 14382976-14385244,14389373-14389842
Length = 912
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 121 FPDMTYSKLSARFPS-VSRGFHSPPSGYPFSLNVVAKTKRNFSPNCI 258
FP YS +SA S +S F S G S+ V+ K NFS +CI
Sbjct: 541 FPTELYSHVSAANSSNISELFES--HGMQLSVEVLLKATNNFSEDCI 585
>11_01_0124 + 975921-976589,1010229-1011290
Length = 576
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 160 PSVSRGFHSPPSGYPFSLNVVAKTKRNFSPNCIGYIQELMSNIKSILNDSDSQCNRLTL 336
P V++ + PS N+V T N + G ++++MSN+K L +S + R T+
Sbjct: 15 PPVTKTGAANPSTEVNPSNIVPVTLDNLTAEQRGELEQMMSNVKDQLMNSFQETRRGTI 73
>10_06_0094 - 10604597-10605028,10605673-10605738,10606249-10606371
Length = 206
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = -2
Query: 393 AIRGH----FQRQRHGSGGQKVRQSQPIALRIGI-IQNGFNIGH*FLDI-SNAIRRKVSF 232
AIR H + ++R G G Q + P L + ++ + F+ SN ++ +V
Sbjct: 7 AIRAHRSASWPKERAGGGAQGSSEPPPAPLILAFHVKLPQKMSLPFIKTESNIVKNEVPQ 66
Query: 231 SFGHDVEGKRIP*RRRMEP 175
DV +R+P RRR+ P
Sbjct: 67 KCRPDVRHRRVPQRRRLRP 85
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +1
Query: 253 CIGYIQELMSNIKSI-LNDSDSQC-NRLTLSNFLPSGSMSLTLKMSSNSTPAMIK 411
C+G+I + +SN+KS+ ++ + S C N S+ S +S S +S PA+++
Sbjct: 755 CLGFILQKLSNLKSVTMSTAGSSCVNSTDASSANVSVRISGDGLSSMSSPPALVE 809
>07_03_1652 - 28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 112 LYTFPDMTYSKLSARFPSVSRGFHSPPSGYPFSLNVVAKTKRNFSPNCIGYIQELMSNIK 291
+Y + + S +S R PS RG+ + P GY ++ V +N + + E +SN++
Sbjct: 1013 VYEWQEPQCSNIS-RLPSSYRGYRTKPCGY--RVHTVDFEFKNLETKFVRFFAETISNVQ 1069
>07_03_0314 +
16669072-16669553,16669936-16671106,16671394-16672042,
16672165-16672187
Length = 774
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 298 LNDSDSQ-CNRLTLSNFLPSGSMSLTLKMSSNSTPAMIKFYPVNLFY*NNINN 453
LN SD+Q C L + P +++ + + SN+ + +PVN+ Y + NN
Sbjct: 463 LNLSDNQLCGTLPRT---PEDMLAMVMDLGSNNLTGQVPRFPVNITYFDLSNN 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,221,349
Number of Sequences: 37544
Number of extensions: 352977
Number of successful extensions: 1019
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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