Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P07
         (604 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49199-1|CAA89060.1|  150|Homo sapiens RNA polymerase II subunit...   186   4e-47
BC000739-1|AAH00739.1|  150|Homo sapiens polymerase (RNA) II (DN...   186   4e-47
AJ252079-1|CAB92189.1|  150|Homo sapiens RPB8 protein.                186   4e-47
U37689-1|AAA91458.1|  150|Homo sapiens RNA polymerase II subunit...   184   2e-46

>Z49199-1|CAA89060.1|  150|Homo sapiens RNA polymerase II subunit
           hRPB17 protein.
          Length = 150

 Score =  186 bits (454), Expect = 4e-47
 Identities = 86/118 (72%), Positives = 102/118 (86%)
 Frame = -3

Query: 404 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 225
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 224 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSF 51
           A+TL E+G  D GE+NP +   +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSY 118


>BC000739-1|AAH00739.1|  150|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide H protein.
          Length = 150

 Score =  186 bits (454), Expect = 4e-47
 Identities = 86/118 (72%), Positives = 102/118 (86%)
 Frame = -3

Query: 404 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 225
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 224 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSF 51
           A+TL E+G  D GE+NP +   +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSY 118


>AJ252079-1|CAB92189.1|  150|Homo sapiens RPB8 protein.
          Length = 150

 Score =  186 bits (454), Expect = 4e-47
 Identities = 86/118 (72%), Positives = 102/118 (86%)
 Frame = -3

Query: 404 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 225
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 224 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSF 51
           A+TL E+G  D GE+NP +   +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSY 118


>U37689-1|AAA91458.1|  150|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 150

 Score =  184 bits (448), Expect = 2e-46
 Identities = 85/118 (72%), Positives = 101/118 (85%)
 Frame = -3

Query: 404 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 225
           MAG+LFEDIF+VKD+DPE KKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEAKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 224 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSF 51
           A+TL E+G  D GE+NP +   +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSY 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,547,692
Number of Sequences: 237096
Number of extensions: 1821559
Number of successful extensions: 3791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3791
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)