Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P05
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   239   2e-64
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   238   6e-64
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   4.5  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   7.9  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  239 bits (586), Expect = 2e-64
 Identities = 115/166 (69%), Positives = 131/166 (78%)
 Frame = -1

Query: 699 IVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLT 520
           I EGLM            VDGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGKLT
Sbjct: 170 IEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLT 229

Query: 519 GMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGD 340
           GMAFRVP  +VSVVDLTV+L KP +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD
Sbjct: 230 GMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGD 289

Query: 339 SHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD 202
           +HSSIFDA+AGI L+  FVKL+SWYDNE+GYS RV+DL+ Y  SKD
Sbjct: 290 NHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTASKD 335


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  238 bits (582), Expect = 6e-64
 Identities = 114/166 (68%), Positives = 131/166 (78%)
 Frame = -1

Query: 699 IVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLT 520
           I EGLM            VDGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGKLT
Sbjct: 170 IEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLT 229

Query: 519 GMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGD 340
           GMAFRVP  +VSVVDLTV+L KP +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD
Sbjct: 230 GMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGD 289

Query: 339 SHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD 202
           +HSSIFDA+AGI L+  FVKL+SWYDNE+GYS RV+DL+ Y  +KD
Sbjct: 290 NHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTAAKD 335


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +1

Query: 361 HNLIFSIPE---NALQRTFSCLLDLLLDGF 441
           +++I  IPE   N++Q T  C+LD +LD F
Sbjct: 174 NDMIDEIPEKLENSIQTTIDCVLDFVLDVF 203


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 306 ISLNDNFV-KLISWYDNEYGYSSRVIDLIKYI 214
           +  +DNFV K I+WY N   YSS +    +Y+
Sbjct: 307 LGYSDNFVNKGINWYYNWGSYSSGLSSSFEYV 338


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 172 LTFIHLIKSLIFRLNVLDEINDS---AGITIFIVVPTDQLHKVVIQRNSSGSIKD 327
           + F H I+SL+F L+  +E+  S   +G   +++      +  ++Q+  SGS+ D
Sbjct: 502 IPFAHAIESLLFSLDEENELQVSCAASGTLNYLIRHRLFSYSTLVQKGFSGSVFD 556


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
 Frame = +2

Query: 317 ASKIEECESPMKSEDTT*SSVYPRMPFKGPSAASLTFCLMAS*LAGFPR-RTVRSTTDTL 493
           +SK EE  +   S   T   + P  P+  PS A  +     S  AG+   +T  +TT+  
Sbjct: 303 SSKREEAAAEPSSSTAT--DIPP--PYSTPSVAGASDYSTPS--AGYQTVQTTTTTTEAA 356

Query: 494 ATGTRNAI---PVSLPLRAGITLPTALAAPVEAGMMFC*APRPS 616
           A     A    P  +P  A   + T +AAPV A       P P+
Sbjct: 357 AAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPA 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,331
Number of Sequences: 5004
Number of extensions: 49761
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)