Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P04
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    27   3.7  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.8  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   6.4  

>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 603 ILATRPRFASETVIYY*FLHYLMDVIIHINLPLQSLYLLK 484
           IL    R  S  ++ Y FL+Y  + II + LPL +L+ ++
Sbjct: 522 ILVVSHRIVSNILMTY-FLNYHPEDIIDVGLPLHTLFCIE 560


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 645 HHTNVCPVWESNPRPSAQQSEDANYC 722
           ++ N C +W+ +P  S+   +D   C
Sbjct: 207 YYCNKCKLWDDDPNKSSYHCDDCGIC 232


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 145 SIYKLHYIINKLFFCVQNKXTH 210
           ++Y+LH+ +++L  C++N   H
Sbjct: 246 NVYELHWSMSRLLACIKNGEVH 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,802
Number of Sequences: 5004
Number of extensions: 58427
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)