Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P04
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0182 + 28243881-28245406,28245460-28245505,28246309-282464...    31   0.95 
11_01_0167 - 1360166-1360369,1360747-1360823,1360911-1361534,136...    30   2.2  
09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709,932...    29   5.1  
10_08_0046 + 14411844-14413154,14413753-14413800,14413879-144139...    28   8.8  

>05_07_0182 +
           28243881-28245406,28245460-28245505,28246309-28246400,
           28246513-28246635,28246753-28246984
          Length = 672

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 541 IVEKSIVNYSFRSEARAGR*YIDNKHTNNEQTNLFITRM 657
           +VE+ + +  FR    A R Y+D  H  NE   L +T++
Sbjct: 130 VVEEGVYSLRFRLTPAAERLYLDELHLKNESEGLAVTKL 168


>11_01_0167 -
           1360166-1360369,1360747-1360823,1360911-1361534,
           1361621-1361825
          Length = 369

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 708 PLTVAPRVVGS-IPTPDXHSCDEQVCLLV----VRVFIIYILATRPRFASETVIYY*FLH 544
           PL  APRV+   +   D  SC E+   LV     RV    + A RPR A   V++     
Sbjct: 206 PLGCAPRVMWEGLHVVDGRSCVEEANELVQGYNARV-AARLAALRPRLAGADVVFCDIYK 264

Query: 543 YLMDVIIH 520
            +MD+I H
Sbjct: 265 GIMDIITH 272


>09_02_0431 -
           9327167-9327226,9327347-9327474,9327594-9327709,
           9327816-9327895,9328787-9328912,9329676-9329856,
           9330514-9330578,9330655-9330915
          Length = 338

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 571 NCNLLLISPLFNGCYYTYKP 512
           NCNL++I  LF   Y+ YKP
Sbjct: 304 NCNLVIIDFLFRHGYHVYKP 323


>10_08_0046 +
           14411844-14413154,14413753-14413800,14413879-14413992,
           14414218-14414496,14414602-14414715,14415210-14415282,
           14415973-14416073
          Length = 679

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 316 KLGFPLPVLWVPDYIVHRYLLTFKYM 393
           KLG P PVL+  D ++H   LTF+Y+
Sbjct: 501 KLGVPTPVLYAVDPLLH--TLTFEYV 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,555
Number of Sequences: 37544
Number of extensions: 318990
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)