Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P03
         (313 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   0.75 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   2.3  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   4.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   6.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    19   9.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
 Frame = +2

Query: 41  PPTGIDDSFSRPAAISCST-SLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPST 217
           PP  ID S +  A + CS    P   +I   S   +      LR     A   +V PP  
Sbjct: 29  PPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVGDVPGLR--QVLANGNLVFPPFR 86

Query: 218 ASKY 229
           A  Y
Sbjct: 87  AEDY 90


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 182 SAAAGVVLPPSTASKYA 232
           +AAA  +LPP TA+  A
Sbjct: 131 AAAAAALLPPQTAAMAA 147


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 144 DAEKLKKVITE 112
           +AEKLKK ITE
Sbjct: 54  EAEKLKKGITE 64


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 178 NVSGSWRGLATQHS 219
           ++ G+W G A  HS
Sbjct: 215 DLRGNWAGFADSHS 228


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 210 PAQPVNTRPRN 242
           PA+PVN  PR+
Sbjct: 283 PARPVNQVPRD 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,044
Number of Sequences: 336
Number of extensions: 958
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5730534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)