Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P02
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   1.8  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   7.3  
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.6  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 415 QASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRLDR 275
           QA L + IE    + QE+++   +E     +K +QLKL ++  R  R
Sbjct: 569 QAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRR 615


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 172 EDKEKLVDKTQTKKKVLTAIDENYIPPEILP 80
           E  EKL+   +T +  + A D   I PE+LP
Sbjct: 279 EKNEKLLQNVKTSEIPINAADLEGINPELLP 309


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 211 WFFENEEKIDLQIEDKEKLVDKTQTKKKVLTAIDENYIPPEILPK 77
           WF E+E++  +  ++KE+L+ + + ++K L         PE  PK
Sbjct: 68  WFRESEKRELMWKKEKEQLLKEKELRQKALDKERMVSSKPETNPK 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,369
Number of Sequences: 5004
Number of extensions: 35490
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)