Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P02
         (658 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    31   0.042
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   3.7  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 30.7 bits (66), Expect = 0.042
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = -1

Query: 442  EIIPTKPSLQASLTDN--IENAINKTQEKDVAAQKEL--FILWEKTRQLKLEEQSHRLDR 275
            E++ T+  ++  LTD   ++  +++  ++    QKEL  +I  EK  Q KLEE   R+++
Sbjct: 865  EVVATEKRIKKVLTDTEEVDRKLSEALKQQKTLQKELESWIQKEKEAQEKLEEDGKRMEK 924


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = -1

Query: 448  KIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRLDR 275
            KIE++  + +   +L D +E  + K + +  A  KEL  + +    ++   +S +  R
Sbjct: 879  KIELMKQEKAAHKTLVDQMEEEMAKARREVQALAKELAAIHQSIANIESRIESMKSKR 936


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,994
Number of Sequences: 2352
Number of extensions: 7226
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)