Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_P02
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 70  IVVWVRFLVVYSFHLLLLKPFSLFAFYLQVFLYLQF 177
           IV W+ F V+      L  P ++ AF   +FL+L +
Sbjct: 382 IVCWLPFFVLALVRPFLKNPDAIPAFLSSLFLWLGY 417


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 99  YHQKSYPNDDNTLLIHYNSIKL 34
           Y+ K+Y N+ N+  ++YN I +
Sbjct: 309 YNYKNYNNNYNSKKLYYNIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 99  YHQKSYPNDDNTLLIHYNSIKL 34
           Y+ K+Y N+ N+  ++YN I +
Sbjct: 320 YNYKNYNNNYNSKKLYYNIINI 341


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 108 KTIYHQKSYPNDDNTLLIHYNSIKLI*KPISLY 10
           KTI++  +Y N +  L  +  +I+ I  P+ +Y
Sbjct: 321 KTIHNNNNYKNYNKKLYYNIINIEQIPVPVPVY 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,750
Number of Sequences: 438
Number of extensions: 2515
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)