Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O24
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   162   1e-40
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    35   0.032
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  162 bits (394), Expect = 1e-40
 Identities = 78/100 (78%), Positives = 87/100 (87%), Gaps = 1/100 (1%)
 Frame = -1

Query: 478 MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 302
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 301 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 182
           MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRA 100



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = -2

Query: 108 MKIGRIEDVTPVPSDSTRRTGWPR 37
           MKIGRIEDVTP+PSD TRR G  R
Sbjct: 125 MKIGRIEDVTPIPSDCTRRKGGRR 148


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = -1

Query: 526 NCFFLDFDSSQAKG*AMAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHV 347
           NCFF  F +   +     PRKN  +K++++  +  +  V +T+F     F  FN+ F   
Sbjct: 18  NCFFFQFSAKYLEFSVNFPRKN--SKKKLETIIFYEKNVEKTLFFTKQYFKFFNEKFQFF 75

Query: 346 TDLSGRE 326
           ++LS ++
Sbjct: 76  SNLSNKK 82


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 424 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 296
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,227,480
Number of Sequences: 27780
Number of extensions: 265069
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)