Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_O23
(589 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M62400-1|AAA52509.1| 473|Homo sapiens gamma-aminobutyric acid r... 32 1.3
BC130344-1|AAI30345.1| 474|Homo sapiens gamma-aminobutyric acid... 32 1.3
AL353659-1|CAC36328.2| 473|Homo sapiens gamma-aminobutyric acid... 32 1.3
AL353135-3|CAI16246.1| 473|Homo sapiens gamma-aminobutyric acid... 32 1.3
Z32684-1|CAA83632.2| 444|Homo sapiens membrane transport protei... 31 3.0
DQ062746-1|AAY43132.1| 444|Homo sapiens Kell blood group precur... 31 3.0
BC036019-1|AAH36019.1| 444|Homo sapiens X-linked Kx blood group... 31 3.0
AY534238-1|AAT07087.1| 444|Homo sapiens XK-related protein 1 pr... 31 3.0
>M62400-1|AAA52509.1| 473|Homo sapiens gamma-aminobutyric acid
receptor type A rho-1 subunit protein.
Length = 473
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 195 YVYTEE-LFYFWKGFNHSNNKFDRLCTITKVFLNKFNYLTVVVFH*FSISNNQXQHNFHF 371
Y YTE+ L +WK N S K D ++++ + +F+ T + F+ + N+ NF
Sbjct: 213 YAYTEDDLMLYWKKGNDS-LKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTL 271
Query: 372 ST-VHALLLXACFEAFIMIIIS 434
+ LL F A +M+++S
Sbjct: 272 RRHIFFFLLQTYFPATLMVMLS 293
>BC130344-1|AAI30345.1| 474|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, rho 1 protein.
Length = 474
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 195 YVYTEE-LFYFWKGFNHSNNKFDRLCTITKVFLNKFNYLTVVVFH*FSISNNQXQHNFHF 371
Y YTE+ L +WK N S K D ++++ + +F+ T + F+ + N+ NF
Sbjct: 214 YAYTEDDLMLYWKKGNDS-LKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTL 272
Query: 372 ST-VHALLLXACFEAFIMIIIS 434
+ LL F A +M+++S
Sbjct: 273 RRHIFFFLLQTYFPATLMVMLS 294
>AL353659-1|CAC36328.2| 473|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, rho 1 protein.
Length = 473
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 195 YVYTEE-LFYFWKGFNHSNNKFDRLCTITKVFLNKFNYLTVVVFH*FSISNNQXQHNFHF 371
Y YTE+ L +WK N S K D ++++ + +F+ T + F+ + N+ NF
Sbjct: 213 YAYTEDDLMLYWKKGNDS-LKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTL 271
Query: 372 ST-VHALLLXACFEAFIMIIIS 434
+ LL F A +M+++S
Sbjct: 272 RRHIFFFLLQTYFPATLMVMLS 293
>AL353135-3|CAI16246.1| 473|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, rho 1 protein.
Length = 473
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 195 YVYTEE-LFYFWKGFNHSNNKFDRLCTITKVFLNKFNYLTVVVFH*FSISNNQXQHNFHF 371
Y YTE+ L +WK N S K D ++++ + +F+ T + F+ + N+ NF
Sbjct: 213 YAYTEDDLMLYWKKGNDS-LKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTL 271
Query: 372 ST-VHALLLXACFEAFIMIIIS 434
+ LL F A +M+++S
Sbjct: 272 RRHIFFFLLQTYFPATLMVMLS 293
>Z32684-1|CAA83632.2| 444|Homo sapiens membrane transport protein
protein.
Length = 444
Score = 31.1 bits (67), Expect = 3.0
Identities = 13/36 (36%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +1
Query: 157 YDI-LKPXAIVCIFMFIQRNYSISGKVLIIVIISSI 261
Y++ +KP A VCIF++ R++ I+ +V+++V+ +S+
Sbjct: 199 YEVKVKPLAYVCIFLW--RSFEIATRVVVLVLFTSV 232
>DQ062746-1|AAY43132.1| 444|Homo sapiens Kell blood group precursor
(McLeod phenotype) protein.
Length = 444
Score = 31.1 bits (67), Expect = 3.0
Identities = 13/36 (36%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +1
Query: 157 YDI-LKPXAIVCIFMFIQRNYSISGKVLIIVIISSI 261
Y++ +KP A VCIF++ R++ I+ +V+++V+ +S+
Sbjct: 199 YEVKVKPLAYVCIFLW--RSFEIATRVVVLVLFTSV 232
>BC036019-1|AAH36019.1| 444|Homo sapiens X-linked Kx blood group
(McLeod syndrome) protein.
Length = 444
Score = 31.1 bits (67), Expect = 3.0
Identities = 13/36 (36%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +1
Query: 157 YDI-LKPXAIVCIFMFIQRNYSISGKVLIIVIISSI 261
Y++ +KP A VCIF++ R++ I+ +V+++V+ +S+
Sbjct: 199 YEVKVKPLAYVCIFLW--RSFEIATRVVVLVLFTSV 232
>AY534238-1|AAT07087.1| 444|Homo sapiens XK-related protein 1
protein.
Length = 444
Score = 31.1 bits (67), Expect = 3.0
Identities = 13/36 (36%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +1
Query: 157 YDI-LKPXAIVCIFMFIQRNYSISGKVLIIVIISSI 261
Y++ +KP A VCIF++ R++ I+ +V+++V+ +S+
Sbjct: 199 YEVKVKPLAYVCIFLW--RSFEIATRVVVLVLFTSV 232
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,643,952
Number of Sequences: 237096
Number of extensions: 1229877
Number of successful extensions: 1720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -