Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O21
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   127   2e-30
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...   121   1e-28
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   4.3  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   5.6  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   5.6  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.5  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   9.9  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  127 bits (306), Expect = 2e-30
 Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 1/187 (0%)
 Frame = -2

Query: 669 NFRTNPNYMXMFELFNETLWRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXX 493
           +FR    Y+ + ELF++  ++T +GQ LD +T    + D S F+L +             
Sbjct: 138 HFRQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYS 197

Query: 492 YNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQER 313
           + LPV+L + LA     +  K AQDI + +G  FQ+QDD++DC+GD   TGK+GTDI + 
Sbjct: 198 FYLPVALAMHLAGVATPENLKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDN 257

Query: 312 KCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNI 133
           KC+W+   AL +CT  QR +    YG  +    +R+K ++E+L++   +++ E++    I
Sbjct: 258 KCSWIINLALAKCTPEQRVILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEI 317

Query: 132 IRQIENI 112
            + I+ +
Sbjct: 318 KKLIDGV 324


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score =  121 bits (291), Expect = 1e-28
 Identities = 62/186 (33%), Positives = 100/186 (53%), Gaps = 1/186 (0%)
 Frame = -2

Query: 666 FRTNPNYMXMFELFNETLWRTSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXY 490
           FR  P Y+ + + F E  + T +GQ  D ++  + +    SF L +             +
Sbjct: 143 FRNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSF 202

Query: 489 NLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERK 310
            LP+   LLL+ N ++K Y +   +   +G  FQ+QDD++DCFGD    GKVG DIQ+ K
Sbjct: 203 YLPIKCALLLSRNSNQKAYDTTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNK 262

Query: 309 CTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNII 130
           CTWL   A +  +  Q  + +A YG +   ++  IK+LY +L +P++Y   E  M D+I 
Sbjct: 263 CTWLVCYAEKFASADQLNLLRAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSIS 322

Query: 129 RQIENI 112
           ++I+ I
Sbjct: 323 KEIDLI 328


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 405 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 229
           IGT FQ+ DD +D    +   GK  G D++    T   + A ++  E    +       +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318

Query: 228 EPAHVERIKRLYE 190
            P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 216 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 124
           ++R ++  E++H+PQ+Y     + Y  I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 423 QDICLEIGTMFQIQDDFIDCFGDE 352
           Q +C+ IG M    DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 455 KMWMKKFINLLKTFAWK*ERCS 390
           K  +K+F NLLKTFA + ER +
Sbjct: 93  KRRIKRFRNLLKTFACRIERAN 114


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 386 IWNIVPISKQMS*ADL*IFSSTFSASS 466
           IWNIVP++ + S   L ++SS+F A++
Sbjct: 110 IWNIVPLNARWS--ALLLYSSSFMATT 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,796
Number of Sequences: 5004
Number of extensions: 53888
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)