Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O20
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   146   2e-36
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   138   6e-34
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    31   0.23 
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   2.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.8  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  146 bits (355), Expect = 2e-36
 Identities = 76/139 (54%), Positives = 90/139 (64%)
 Frame = -2

Query: 436 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 257
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 256 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 77
             P+ SE+AMKKIED+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KK  
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122

Query: 76  XXXXXXXXXXXXANKIGII 20
                       AN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  138 bits (335), Expect = 6e-34
 Identities = 72/139 (51%), Positives = 87/139 (62%)
 Frame = -2

Query: 436 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 257
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 256 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 77
             P+ SE+AMKKIED+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KK  
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122

Query: 76  XXXXXXXXXXXXANKIGII 20
                       AN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 5   IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 121
           +W +++ A FV +   + +S    +RFL  ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = -3

Query: 255 NSLSRLKQQ*RRLKITTPWSLLFTQVQTSTISRLQSRNSMI*MLLKSTHSSGLMVRRKRT 76
           N L +L+   R +K+T+      T +     S+++S +  +  L   T  + L+ +    
Sbjct: 396 NLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSL--DTERADLLAKINEK 453

Query: 75  YDSLEMMTHWTLPTKLASYKLFH 7
            +SLE+  H     +L   +LFH
Sbjct: 454 IESLELEKHDQQKKRLTYSELFH 476


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 272 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 445
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 446 YFFLSLNPSL 475
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 47  QCVIISSESYVRFLLTIRPDECVDFSNIY 133
           +C+ I  E +  FL  I+P E V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 536 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 447
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = -2

Query: 277  MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 125
            + A+++ +F    E  ++  +DN T   I H  + ++ + A     +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 11  NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 106
           ++   +NF  NV C I   +S   F   IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,972
Number of Sequences: 5004
Number of extensions: 44442
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)