Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O17
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   121   9e-29
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.5  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  121 bits (292), Expect = 9e-29
 Identities = 65/151 (43%), Positives = 84/151 (55%)
 Frame = -1

Query: 700 WGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXXX 521
           WGATVITNLLSA+P++G  LV+ + GGF+V N TL RF++                    
Sbjct: 142 WGATVITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIAL 201

Query: 520 HQTGSNNPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXINPYLLGDPDNFTPAN 341
           H  GS+NPLG+  N+D+IP +P++  KD                 NPY   +PD   PA+
Sbjct: 202 HTNGSSNPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGFMEPDCALPAD 261

Query: 340 PLVTPVHIQPE*YFLFAYAILRSIPNKLGGV 248
           PL TP+ I PE Y L  YAILR+IPN   GV
Sbjct: 262 PLKTPMSIVPEWYLLPFYAILRAIPNFQLGV 292


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 139 ILSNYNFINMNRSPTCRKSIYYYRTIINN 53
           ++S YNF  M RS     S+YY RT  +N
Sbjct: 731 VISAYNFSTMIRSSMQFVSLYYIRTHQSN 759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,813
Number of Sequences: 5004
Number of extensions: 28232
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)