Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O14
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   2.6  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   3.5  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   3.5  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    24   4.6  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    24   6.1  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    24   6.1  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    23   8.1  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     23   8.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    23   8.1  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 LVTVVNVEG*ILARNTAVRMVSHEIRYHISAQFV 221
           L+T  NV   +L R+  V ++  E  YHI  Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 257 NVKMITPLTRISNKLGRN 204
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 278 YLLENRRNVKMITPLTRISNKLGRNVVTN 192
           YL   R   +  TPL+ ISN L  N V N
Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 203 VVTNFVRNHSNGGIPGENLPF 141
           +    +RN ++ G P ENLPF
Sbjct: 204 IALQMIRNINDLGTPDENLPF 224


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 31  LXSFFKSWCRVXXXGADSPAPAYRXXYN 114
           L +FF  WC V   GA   A  +   YN
Sbjct: 132 LSNFFTFWCYVTPVGAALIADQFLGRYN 159


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 171 RRYSWRESTLRHSQPLQADIVXXPICGRWTISTXAXHPAPA 49
           RRYS  ES ++  +      +  PI G+ ++ + A HP  A
Sbjct: 54  RRYSDFESLVKLMRRQYPAAIVPPIPGKQSLLSYAKHPRKA 94


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 175 EWFLTKFVTTFLPNLFEMR 231
           +WF TK  +  LP++F++R
Sbjct: 16  KWFNTKLSSRDLPSVFDLR 34


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 181 FLTKFVTTFLPNLFEMRVNGVIIFT 255
           F   F+T  +PN+ E  +   I++T
Sbjct: 288 FAKNFITNVVPNILETYIQQTILWT 312


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 155 ENLPFDIHNRYKLTLYXXLYAGAGLSAP 72
           E   F+++N Y LTL+  ++      AP
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAP 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,222,867
Number of Sequences: 5004
Number of extensions: 21127
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)